Showing : ChipQC • reset
0
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163
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Unevaluated error in ChIPQC combined with BiocParallel
BiocParallel ChIPQC
written 4 weeks ago by • 0
2
votes
1
reply
1.9k
views
DiffBind: Error in if (res$config$bCorPlot) { : the condition has length > 1
DiffBind ChIPQC
updated 2.2 years ago by ★ 5.2k • written 2.2 years ago by • 0
4
votes
13
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4.4k
views
BiocParallel error with ChIPQC
BiocManager ChIPQC RSamtools BiocParallel
updated 22 months ago by ★ 5.2k • written 2.4 years ago by • 0
0
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7
replies
2.2k
views
CHIPQC error regarding BiocParallel
CHIPQC Diffbind chipseq rory stark Thomas Carroll
updated 2.2 years ago by ▴ 40 • written 4.6 years ago by ▴ 10
1
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2
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1.2k
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Could it be possible to get an older version of ChIPQC?
ChIPQC ChIP-seq DiffBind Rory_Stark
2.3 years ago etiennedanis • 0
0
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3
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1.0k
views
ChIPQC: Depths of coverage plot - Figure 1 of the ChIPQC report
ChIPQC
written 3.3 years ago by • 0
0
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1
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1.1k
views
saving png images and X11
ChipQC
updated 2.7 years ago by ★ 4.5k • written 2.7 years ago by ▴ 670
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0
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951
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Generate a custom annotation for ChIPQC
ChIPQC
updated 2.7 years ago by 67k • written 2.7 years ago by • 0
0
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2
replies
1.1k
views
ChIP-seq or CUT&RUN enrichment
ChIPQC ChIPpeakAnno
2.7 years ago Bogdan ▴ 670
3
votes
6
replies
15k
views
Error: Faceting variables must have at least one value when plotting with ChIPQC
ChipQC chipqc
updated 2.1 years ago by • 0 • written 8.2 years ago by ▴ 10
0
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0
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640
views
ChIPQC: Theme
ChIPQC
3.3 years ago etiennedanis • 0
1
vote
2
replies
964
views
ChIPQC: log2 or log10?
ChIPQC
3.3 years ago etiennedanis • 0
3
votes
1
reply
1.1k
views
ChIPQC 'Contigs of interest are not all in Bam file!!' error
ChIPQC
3.5 years ago Jonah ▴ 20
0
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2
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1.3k
views
ChIPQC error in previously working code (BAM association error)
chipqc
updated 23 months ago by • 0 • written 3.6 years ago by ▴ 50
2
votes
3
replies
2.0k
views
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
chipqc
updated 5 months ago by • 0 • written 4.1 years ago by ▴ 60
2
votes
7
replies
2.2k
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC annotation rn6
updated 10 months ago by • 0 • written 4.1 years ago by • 0
0
votes
2
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1.6k
views
Error while running ChIPQC
ChIPQC
updated 4.0 years ago by ★ 4.0k • written 4.0 years ago by • 0
1
vote
3
replies
3.1k
views
Downsampling ChIP-seq BAM files with spike in normalization factor before feeding into Diffbind
diffbind chipseq chipqc
updated 4.0 years ago by ★ 5.2k • written 6.7 years ago by ▴ 10
0
votes
0
replies
1.3k
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ChIPQC BiocParallel problems and how to select the "PeakCaller" for broad histone modification
ChIPQC
4.1 years ago lida • 0
0
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0
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853
views
ChIPQC cross-coverage plot
chipqc chip-seq
4.6 years ago tuteja.reetu • 0
0
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0
replies
729
views
Missing some plots and columns in my ChIPQC report
ChIPQC BioConductor
4.7 years ago mudithekanayake • 0
0
votes
1
reply
902
views
ChIPQC produces empty cross correlation plot
chipqc cross correlation
4.8 years ago nikhil.ashok.joshi • 0
0
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1
reply
1.0k
views
ChIPQC: Error in summary.factor
ChIPQC
updated 5.0 years ago by • 0 • written 5.1 years ago by • 0
0
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0
replies
844
views
ChIPQC makes a neverending loop while using all chromosomes
chipqc chipseq ChIPQC
5.2 years ago laura.mannarino ▴ 20
1
vote
1
reply
1.3k
views
ChIPQC: issues with report generation and QC metrics
ChIPQC software error
5.2 years ago ryleehackley • 0
2
votes
2
replies
1.5k
views
ChIPQC gives Bam file has 297 contigs Error: subscript contains out-of-bounds indices
ChIP-seq ChIPQC QC
updated 5.2 years ago by ▴ 20 • written 5.7 years ago by ▴ 10
3
votes
6
replies
2.0k
views
Integer overflow issue with ChIPQC
ChIPQC Rstudio
updated 5.3 years ago by 25k • written 5.3 years ago by ▴ 30
0
votes
1
reply
1.6k
views
ChIPQC BiocParallel errors
ChIPQC ChIPQC error BiocParallel
5.4 years ago minervajunjun • 0
2
votes
4
replies
3.4k
views
ChIPQC error: "names' attribute [9] must be the same length as the vector [7]"
ChIPQC
updated 3.3 years ago by • 0 • written 5.4 years ago by ▴ 20
0
votes
1
reply
1.3k
views
Unable to annotate in ChIPQC using yeast genome
ChIPQC GenomicRanges ChIPpeakAnno
updated 3.5 years ago by • 0 • written 5.5 years ago by • 0
0
votes
1
reply
974
views
ChIPQC error: NCList object is too deep
ChIPQC
updated 5.8 years ago by ▴ 420 • written 5.8 years ago by • 0
0
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4
replies
2.0k
views
ATAC-Seq peaks quality control with ChIPQC package, but getting error
ATAC-Seq ChIPQC
updated 5.8 years ago by 67k • written 5.8 years ago by ▴ 10
0
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6
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1.7k
views
ChiPQC: 1Error in 1:(2 * readlength(object)) : NA/NaN argument
ChiPQC
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
0
votes
3
replies
1.4k
views
ChIPQC ERROR with "subscript out of bounds"
chipqc
5.8 years ago Chevy Xu • 0
2
votes
6
replies
2.5k
views
ChIPQC: error during annotation compilation
ChIPQC
updated 6.1 years ago by ▴ 420 • written 6.1 years ago by ▴ 10
3
votes
5
replies
2.8k
views
ChIPQC - can't read in bam files
chipqc chipqcreport
6.2 years ago molly_the_minotaur ▴ 30
0
votes
0
replies
890
views
ChIPQC Error in names(res) <- nms
chipqc
6.2 years ago gavrielmatt ▴ 30
1
vote
7
replies
3.1k
views
ChipQC not loading files
ChipQC diffbind
updated 6.2 years ago by ▴ 420 • written 6.2 years ago by • 0
0
votes
2
replies
1.1k
views
ChipQCreport coverage plot failure?
ChipQC chipqcreport
6.2 years ago tapio.envall • 0
0
votes
4
replies
2.4k
views
ChIPQC error: "non-zero exit status"
software error package installation chipqc txdb.hsapiens.ucsc.hg18.knowngene
updated 6.3 years ago by 25k • written 6.3 years ago by • 0
0
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0
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1.3k
views
ChIPQC : ChIPQCreport : Error: Dimensions exceed 50 inches when saving plot with large sampleSheet
chipqc
6.7 years ago ZheFrench ▴ 60
0
votes
0
replies
1.1k
views
ChIPQC 0 unmapped does not agree with the samtool generated stats
ChIPQC
6.9 years ago ew152 • 0
0
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0
replies
1.3k
views
ChIPQC: Error in names(res) <- nms
ChIPQC chip-seq
7.0 years ago nbkingsley • 0
5
votes
11
replies
2.4k
views
ChIPQC Error in .Call2 NCList object is too deep
ChIPQC
updated 7.0 years ago by ▴ 420 • written 7.0 years ago by ▴ 10
0
votes
1
reply
1.7k
views
Can ChIPQC analyze mandarin duck ChIP-Seq data?
ChIPQC
updated 7.1 years ago by ▴ 420 • written 7.2 years ago by ▴ 20
0
votes
4
replies
1.8k
views
Unhelpful Errors Running ChIPQC on Computing Cluster
chipqc chipqcreport
7.2 years ago • updated 7.1 years ago jared.andrews07 ▴ 30
0
votes
0
replies
979
views
ChIPQC stops at chr3 for calculating shift
chipqc
7.1 years ago psudyant • 0
2
votes
5
replies
2.1k
views
Diffbind: dba.plot retrieve variance explained
diffbind chipqc
updated 7.2 years ago by ★ 5.2k • written 7.2 years ago by ▴ 60
3
votes
12
replies
4.2k
views
ChIPQC failling when run ChIPQC() over 6 samples
chipqc
updated 7.2 years ago by ▴ 420 • written 9.7 years ago by • 0
0
votes
3
replies
1.5k
views
ChiPQC run time error
ChiPQC
updated 7.3 years ago by ▴ 420 • written 7.3 years ago by • 0
50 results • Page 1 of 1
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Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k
> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Comment: Problem at champ.load by icecreamlover • 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
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