Bioconductor ChIPseqR

Showing : ChIPseqR • reset

0

votes

1

reply

247

views

HilbertVis ChIPseqR

updated 4 months ago by James W. MacDonald 68k • written 4 months ago by chase.mateusiak • 0

0

votes

2

replies

1.3k

views

ChIPseqR

9 months ago egbastakis • 0

0

votes

1

reply

2.0k

views

ChIPseqR ChIPs ChIPseeker ChIPSeq chipseq

updated 4.4 years ago by James W. MacDonald 68k • written 4.4 years ago by ret28 • 0

1

vote

4

replies

1.9k

views

ChIPseqR

updated 10.4 years ago by Peter Humburg ▴ 30 • written 10.5 years ago by RT ▴ 10

4 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you both for your reply and your time! Sorry I didn't include this earlier but here it is (for the gene of interest): structure(…

Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Votes

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Awards • All