Bioconductor ChIP

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ChIP csaw

updated 6 days ago by Aaron Lun ★ 28k • written 7 days ago by Luca • 0

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diffbind chip-seq chip spike spike-ins

updated 4.7 years ago by Rory Stark ★ 5.2k • written 4.8 years ago by Theo ▴ 10

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chipseeker chipseq chip

updated 7.1 years ago by Guangchuang Yu ★ 1.2k • written 7.1 years ago by rbronste ▴ 60

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GRanges GRangesList ChIP

10.4 years ago patrick.schordert ▴ 30

4 results • Page 1 of 1

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Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k

From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…

Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0

Thank you, I will try this and see.

Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0

Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…

Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status by Renuka • 0

how you did it pls explain

Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by James W. MacDonald 68k

If I understand correctly, you want to assess differential transcript abundances. If so, there are a couple of ways you can do that. One wa…

Votes

A: Effect of lfcThreshold on p-value in DESeq2

Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet

What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?

Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =

Comment: Unused arguments error without used arguments in GSVA?

Awards • All

Scholar to James W. MacDonald 68k