Bioconductor Celegans

Showing : Celegans • reset

votes

702

views

Celegans DESeq2 dds Errorinseq_len(length(idx)-1)

updated 2.4 years ago by James W. MacDonald 68k • written 2.4 years ago by Enzo.Scifo • 0

vote

1.3k

views

BSgenome Celegans

updated 3.0 years ago by Hervé Pagès 16k • written 3.0 years ago by Tsung-Han • 0

vote

replies

2.0k

views

Gviz celegans

updated 7.2 years ago by Robert Ivanek ▴ 750 • written 7.2 years ago by alex.gos90 ▴ 10

votes

replies

1.9k

views

biomaRt bioconductor celegans annotation

updated 7.2 years ago by Mike Smith ★ 6.6k • written 7.2 years ago by clarisbaby • 0

votes

replies

942

views

celegans affy convert celegans affy convert

updated 14.6 years ago by Marc Carlson ★ 7.2k • written 14.6 years ago by Julie Zhu ★ 4.3k

votes

1.2k

views

Transcription GO celegans BSgenome Biostrings BSgenome IRanges Transcription GO celegans

updated 15.2 years ago by Sean Davis 21k • written 15.2 years ago by Paul Shannon ★ 1.1k

votes

1.1k

views

celegans Biostrings celegans Biostrings

updated 16.4 years ago by Hervé Pagès 16k • written 16.4 years ago by Elizabeth Purdom ▴ 210

votes

replies

1.1k

views

celegans celegans

18.0 years ago Gordon Smyth 52k

votes

replies

856

views

Microarray Cancer celegans drosgenome1 affy Microarray Cancer celegans drosgenome1 affy

21.5 years ago James W. MacDonald 68k

9 results • Page 1 of 1

Recent ...

Replies

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0 ![enter image description here][1]…

Answer: DESeq2 - am I extracting results incorrectly? by James W. MacDonald 68k

If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…

Answer: Origin of the labels for the SingleCellMultiModal dataset by ATpoint ★ 4.8k

If you check the underlying code a bit you find that there is a file with data sources: ```r modes_file <- system.file("extdata", "metadat…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by ATpoint ★ 4.8k

That plot looks extremely worrying. You have very unbalanced DE profiles and clearly two populations of peaks on the right. I would make su…

Votes

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder

Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

Awards • All