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CRISPR
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937
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Job:
Research Scientists/Postdoctoral Candidates/Computational Biologists and Programmers excited about computational challenges in modeling CRISPR genome…
CRISPR
SingleCell
Genomics
3.6 years ago
lpinello
• 0
0
votes
2
replies
1.9k
views
Using edgeR to analyze Cripsr/Cas9 Screening data
edger
processamplicons
sgrna
crispr
updated 2.2 years ago by
hyejo
• 0 • written 7.1 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
3
replies
1.4k
views
Independent filtering of NGS data
independentfiltering
DESeq2
CRISPR
4.2 years ago
Rubén
• 0
6
votes
14
replies
2.7k
views
gRNAefficacy calculations in CRISPRseek
crisprseek
crispr
gRNAefficacy
grna
updated 4.6 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
Dawid G. Nowak
▴ 40
1
vote
0
replies
1.2k
views
Job:
Postdoc/Bioinformatician Research Fellow @ Harvard Medical School/MGH/ Boston's Children Hospital
CRISPR
functional genomics
single cell
gene regulatory networks
Job
4.7 years ago
bauer
▴ 10
0
votes
0
replies
1.4k
views
Job:
Scientist 1, Bioinformatics (Research | Berkeley, CA | Full Time)
Bioinformatics
drug-discovery
RNA-seq
CRISPR
Job
4.7 years ago
yzhang
• 0
0
votes
19
replies
3.0k
views
Help with using CRISPRseeker
CRISPR
updated 5.6 years ago by
Julie Zhu
★ 4.3k • written 5.7 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
1.7k
views
EdgeR: run processAmplicons without barcodes
EdgeR
CRISPR
Barcode
processamplicons
updated 6.9 years ago by
sdalin
• 0 • written 8.1 years ago by
neggersjasper
• 0
0
votes
4
replies
2.7k
views
Adaptation of DESeq/edgeR model for CRISPR drop-out screen
crispr
edger
deseq
deseq2
updated 7.5 years ago by
Aaron Lun
★ 28k • written 7.5 years ago by
emanuelvgoncalves
• 0
0
votes
2
replies
1.6k
views
How to start CrispRVariants with fastq file starting point
R
crispr
fastq
8.4 years ago
kfburbach
• 0
0
votes
6
replies
2.2k
views
Manipulating random CRISPR sequences
r
crispr
updated 8.9 years ago by
mousheng xu
▴ 10 • written 9.5 years ago by
shane
• 0
1
vote
1
reply
1.6k
views
CRISPRseek R package: description of output fields that are unclear
crisprseek
R
CRISPR
sgRNA
updated 9.2 years ago by
Julie Zhu
★ 4.3k • written 9.2 years ago by
alexgraehl
▴ 20
2
votes
27
replies
5.1k
views
CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek
sgrna
crispr
cas9
R
9.6 years ago • updated 9.5 years ago
alexgraehl
▴ 20
13 results • Page
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Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
donnycrimson
• 0
Have you considered streamlining how you handle data input to mitigate these issues. It might help to define the parameters more strictly …
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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