Bioconductor CRISPR

Showing : CRISPR • reset

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CRISPR SingleCell Genomics

3.5 years ago lpinello • 0

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edger processamplicons sgrna crispr

updated 2.1 years ago by hyejo • 0 • written 7.0 years ago by Assa Yeroslaviz ★ 1.5k

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1.4k

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independentfiltering DESeq2 CRISPR

4.2 years ago Rubén • 0

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2.7k

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crisprseek crispr gRNAefficacy grna

updated 4.6 years ago by Julie Zhu ★ 4.3k • written 4.6 years ago by Dawid G. Nowak ▴ 40

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CRISPR functional genomics single cell gene regulatory networks Job

4.6 years ago bauer ▴ 10

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1.4k

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Bioinformatics drug-discovery RNA-seq CRISPR Job

4.6 years ago yzhang • 0

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2.9k

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CRISPR

updated 5.6 years ago by Julie Zhu ★ 4.3k • written 5.6 years ago by sharvari gujja ▴ 40

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1.7k

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EdgeR CRISPR Barcode processamplicons

updated 6.9 years ago by sdalin • 0 • written 8.1 years ago by neggersjasper • 0

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2.6k

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crispr edger deseq deseq2

updated 7.4 years ago by Aaron Lun ★ 28k • written 7.4 years ago by emanuelvgoncalves • 0

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1.6k

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R crispr fastq

8.4 years ago kfburbach • 0

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2.2k

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r crispr

updated 8.8 years ago by mousheng xu ▴ 10 • written 9.4 years ago by shane • 0

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crisprseek R CRISPR sgRNA

updated 9.2 years ago by Julie Zhu ★ 4.3k • written 9.2 years ago by alexgraehl ▴ 20

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crisprseek sgrna crispr cas9 R

9.5 years ago • updated 9.4 years ago alexgraehl ▴ 20

13 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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