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CRISPR
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Job:
Research Scientists/Postdoctoral Candidates/Computational Biologists and Programmers excited about computational challenges in modeling CRISPR genome…
CRISPR
SingleCell
Genomics
3.1 years ago
lpinello
• 0
0
votes
2
replies
1.8k
views
Using edgeR to analyze Cripsr/Cas9 Screening data
edger
processamplicons
sgrna
crispr
updated 21 months ago by
hyejo
• 0 • written 6.7 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
3
replies
1.2k
views
Independent filtering of NGS data
independentfiltering
DESeq2
CRISPR
3.8 years ago
Rubén
• 0
6
votes
14
replies
2.4k
views
gRNAefficacy calculations in CRISPRseek
crisprseek
crispr
gRNAefficacy
grna
updated 4.2 years ago by
Julie Zhu
★ 4.3k • written 4.2 years ago by
Dawid G. Nowak
▴ 40
1
vote
0
replies
1.1k
views
Job:
Postdoc/Bioinformatician Research Fellow @ Harvard Medical School/MGH/ Boston's Children Hospital
CRISPR
functional genomics
single cell
gene regulatory networks
Job
4.3 years ago
bauer
▴ 10
0
votes
0
replies
1.2k
views
Job:
Scientist 1, Bioinformatics (Research | Berkeley, CA | Full Time)
Bioinformatics
drug-discovery
RNA-seq
CRISPR
Job
4.3 years ago
yzhang
• 0
0
votes
19
replies
2.6k
views
Help with using CRISPRseeker
CRISPR
updated 5.2 years ago by
Julie Zhu
★ 4.3k • written 5.3 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
1.6k
views
EdgeR: run processAmplicons without barcodes
EdgeR
CRISPR
Barcode
processamplicons
updated 6.5 years ago by
sdalin
• 0 • written 7.7 years ago by
neggersjasper
• 0
0
votes
4
replies
2.4k
views
Adaptation of DESeq/edgeR model for CRISPR drop-out screen
crispr
edger
deseq
deseq2
updated 7.0 years ago by
Aaron Lun
★ 28k • written 7.0 years ago by
emanuelvgoncalves
• 0
0
votes
2
replies
1.5k
views
How to start CrispRVariants with fastq file starting point
R
crispr
fastq
8.0 years ago
kfburbach
• 0
0
votes
6
replies
2.0k
views
Manipulating random CRISPR sequences
r
crispr
updated 8.5 years ago by
mousheng xu
▴ 10 • written 9.1 years ago by
shane
• 0
1
vote
1
reply
1.5k
views
CRISPRseek R package: description of output fields that are unclear
crisprseek
R
CRISPR
sgRNA
updated 8.8 years ago by
Julie Zhu
★ 4.3k • written 8.8 years ago by
alexgraehl
▴ 20
2
votes
27
replies
4.5k
views
CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek
sgrna
crispr
cas9
R
9.1 years ago • updated 9.0 years ago
alexgraehl
▴ 20
13 results • Page
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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
by
rcreed
• 0
The updated version worked well on my data. Thank you!
Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di
by
James W. MacDonald
67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Kent
• 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
by
James W. MacDonald
67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Votes
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
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