Bioconductor CRISPR

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CRISPR SingleCell Genomics

3.2 years ago lpinello • 0

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1.8k

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edger processamplicons sgrna crispr

updated 22 months ago by hyejo • 0 • written 6.8 years ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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independentfiltering DESeq2 CRISPR

3.9 years ago Rubén • 0

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2.4k

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crisprseek crispr gRNAefficacy grna

updated 4.3 years ago by Julie Zhu ★ 4.3k • written 4.3 years ago by Dawid G. Nowak ▴ 40

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1.1k

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CRISPR functional genomics single cell gene regulatory networks Job

4.4 years ago bauer ▴ 10

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1.2k

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Bioinformatics drug-discovery RNA-seq CRISPR Job

4.4 years ago yzhang • 0

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2.6k

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CRISPR

updated 5.3 years ago by Julie Zhu ★ 4.3k • written 5.4 years ago by sharvari gujja ▴ 40

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1.6k

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EdgeR CRISPR Barcode processamplicons

updated 6.6 years ago by sdalin • 0 • written 7.8 years ago by neggersjasper • 0

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2.5k

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crispr edger deseq deseq2

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by emanuelvgoncalves • 0

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1.5k

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R crispr fastq

8.1 years ago kfburbach • 0

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2.1k

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r crispr

updated 8.6 years ago by mousheng xu ▴ 10 • written 9.2 years ago by shane • 0

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crisprseek R CRISPR sgRNA

updated 8.9 years ago by Julie Zhu ★ 4.3k • written 8.9 years ago by alexgraehl ▴ 20

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4.6k

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crisprseek sgrna crispr cas9 R

9.2 years ago • updated 9.1 years ago alexgraehl ▴ 20

13 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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