Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
CHIPQC
•
reset
0
votes
1
reply
210
views
Unevaluated error in ChIPQC combined with BiocParallel
BiocParallel
ChIPQC
written 3 months ago by
Young Boqin
• 0
2
votes
1
reply
1.9k
views
DiffBind: Error in if (res$config$bCorPlot) { : the condition has length > 1
DiffBind
ChIPQC
updated 2.3 years ago by
Rory Stark
★ 5.2k • written 2.4 years ago by
ryleehackley
• 0
4
votes
13
replies
4.6k
views
BiocParallel error with ChIPQC
BiocManager
ChIPQC
RSamtools
BiocParallel
updated 24 months ago by
Rory Stark
★ 5.2k • written 2.6 years ago by
etiennedanis
• 0
0
votes
7
replies
2.3k
views
CHIPQC error regarding BiocParallel
CHIPQC
Diffbind
chipseq
rory stark
Thomas Carroll
updated 2.4 years ago by
arisarkar88
▴ 40 • written 4.7 years ago by
bioinfouser2
▴ 10
1
vote
2
replies
1.2k
views
Could it be possible to get an older version of ChIPQC?
ChIPQC
ChIP-seq
DiffBind
Rory_Stark
2.5 years ago • updated 2.4 years ago
etiennedanis
• 0
0
votes
3
replies
1.1k
views
ChIPQC: Depths of coverage plot - Figure 1 of the ChIPQC report
ChIPQC
written 3.5 years ago by
etiennedanis
• 0
0
votes
1
reply
1.2k
views
saving png images and X11
ChipQC
updated 2.9 years ago by
ATpoint
★ 4.6k • written 2.9 years ago by
Bogdan
▴ 670
0
votes
0
replies
1000
views
Generate a custom annotation for ChIPQC
ChIPQC
updated 2.9 years ago by
James W. MacDonald
67k • written 2.9 years ago by
channie1001
• 0
0
votes
2
replies
1.1k
views
ChIP-seq or CUT&RUN enrichment
ChIPQC
ChIPpeakAnno
2.9 years ago
Bogdan
▴ 670
3
votes
6
replies
15k
views
Error: Faceting variables must have at least one value when plotting with ChIPQC
ChipQC
chipqc
updated 2.3 years ago by
Xue
• 0 • written 8.4 years ago by
thekatybrown
▴ 10
0
votes
0
replies
668
views
ChIPQC: Theme
ChIPQC
3.5 years ago
etiennedanis
• 0
1
vote
2
replies
1.0k
views
ChIPQC: log2 or log10?
ChIPQC
3.5 years ago
etiennedanis
• 0
3
votes
1
reply
1.2k
views
ChIPQC 'Contigs of interest are not all in Bam file!!' error
ChIPQC
3.6 years ago
Jonah
▴ 20
0
votes
2
replies
1.4k
views
ChIPQC error in previously working code (BAM association error)
chipqc
updated 2.1 years ago by
stacy.genovese
• 0 • written 3.7 years ago by
Coby Viner
▴ 50
2
votes
3
replies
2.1k
views
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
chipqc
updated 8 months ago by
bandconductor
• 0 • written 4.3 years ago by
ZheFrench
▴ 60
2
votes
7
replies
2.3k
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC
annotation
rn6
updated 12 months ago by
Raghavaram
• 0 • written 4.3 years ago by
Frédéric Crémazy
• 0
0
votes
2
replies
1.7k
views
Error while running ChIPQC
ChIPQC
updated 4.1 years ago by
Kevin Blighe
★ 4.0k • written 4.2 years ago by
zebasilio
• 0
1
vote
3
replies
3.3k
views
Downsampling ChIP-seq BAM files with spike in normalization factor before feeding into Diffbind
diffbind
chipseq
chipqc
updated 4.2 years ago by
Rory Stark
★ 5.2k • written 6.9 years ago by
bioinfouser2
▴ 10
0
votes
0
replies
1.4k
views
ChIPQC BiocParallel problems and how to select the "PeakCaller" for broad histone modification
ChIPQC
4.2 years ago
lida
• 0
0
votes
0
replies
884
views
ChIPQC cross-coverage plot
chipqc
chip-seq
4.7 years ago
tuteja.reetu
• 0
0
votes
0
replies
768
views
Missing some plots and columns in my ChIPQC report
ChIPQC
BioConductor
4.9 years ago
mudithekanayake
• 0
0
votes
1
reply
944
views
ChIPQC produces empty cross correlation plot
chipqc
cross correlation
5.0 years ago
nikhil.ashok.joshi
• 0
0
votes
1
reply
1.1k
views
ChIPQC: Error in summary.factor
ChIPQC
updated 5.1 years ago by
bl.lagerwaard
• 0 • written 5.3 years ago by
mahmoud.fassad.14
• 0
0
votes
0
replies
882
views
ChIPQC makes a neverending loop while using all chromosomes
chipqc
chipseq
ChIPQC
5.3 years ago
laura.mannarino
▴ 20
1
vote
1
reply
1.4k
views
ChIPQC: issues with report generation and QC metrics
ChIPQC
software error
5.3 years ago
ryleehackley
• 0
2
votes
2
replies
1.6k
views
ChIPQC gives Bam file has 297 contigs Error: subscript contains out-of-bounds indices
ChIP-seq
ChIPQC
QC
updated 5.4 years ago by
zhenfeng.liu1
▴ 20 • written 5.9 years ago by
star
▴ 10
3
votes
6
replies
2.1k
views
Integer overflow issue with ChIPQC
ChIPQC
Rstudio
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
Nitesh Kumar Singh
▴ 30
0
votes
1
reply
1.6k
views
ChIPQC BiocParallel errors
ChIPQC
ChIPQC error
BiocParallel
5.5 years ago
minervajunjun
• 0
2
votes
4
replies
3.5k
views
ChIPQC error: "names' attribute [9] must be the same length as the vector [7]"
ChIPQC
updated 3.4 years ago by
Yue
• 0 • written 5.6 years ago by
analeigh.gui
▴ 20
0
votes
1
reply
1.3k
views
Unable to annotate in ChIPQC using yeast genome
ChIPQC
GenomicRanges
ChIPpeakAnno
updated 3.7 years ago by
Zender
• 0 • written 5.7 years ago by
bertb
• 0
0
votes
1
reply
1.0k
views
ChIPQC error: NCList object is too deep
ChIPQC
updated 5.9 years ago by
Thomas Carroll
▴ 420 • written 6.0 years ago by
nikhil.ashok.joshi
• 0
0
votes
4
replies
2.1k
views
ATAC-Seq peaks quality control with ChIPQC package, but getting error
ATAC-Seq
ChIPQC
updated 5.9 years ago by
James W. MacDonald
67k • written 5.9 years ago by
Subinoy Biswas
▴ 10
0
votes
6
replies
1.8k
views
ChiPQC: 1Error in 1:(2 * readlength(object)) : NA/NaN argument
ChiPQC
updated 5.9 years ago by
Martin Morgan
25k • written 5.9 years ago by
zebasilio
• 0
0
votes
3
replies
1.5k
views
ChIPQC ERROR with "subscript out of bounds"
chipqc
6.0 years ago
Chevy Xu
• 0
2
votes
6
replies
2.6k
views
ChIPQC: error during annotation compilation
ChIPQC
updated 6.3 years ago by
Thomas Carroll
▴ 420 • written 6.3 years ago by
hdingwall
▴ 10
3
votes
5
replies
2.9k
views
ChIPQC - can't read in bam files
chipqc
chipqcreport
6.3 years ago
molly_the_minotaur
▴ 30
0
votes
0
replies
926
views
ChIPQC Error in names(res) <- nms
chipqc
6.4 years ago
gavrielmatt
▴ 30
1
vote
7
replies
3.2k
views
ChipQC not loading files
ChipQC
diffbind
updated 6.4 years ago by
Thomas Carroll
▴ 420 • written 6.4 years ago by
annap
• 0
0
votes
2
replies
1.2k
views
ChipQCreport coverage plot failure?
ChipQC
chipqcreport
6.4 years ago
tapio.envall
• 0
0
votes
4
replies
2.5k
views
ChIPQC error: "non-zero exit status"
software error
package installation
chipqc
txdb.hsapiens.ucsc.hg18.knowngene
updated 6.5 years ago by
Martin Morgan
25k • written 6.5 years ago by
hallie.s
• 0
0
votes
0
replies
1.3k
views
ChIPQC : ChIPQCreport : Error: Dimensions exceed 50 inches when saving plot with large sampleSheet
chipqc
6.9 years ago
ZheFrench
▴ 60
0
votes
0
replies
1.2k
views
ChIPQC 0 unmapped does not agree with the samtool generated stats
ChIPQC
7.1 years ago
ew152
• 0
0
votes
0
replies
1.4k
views
ChIPQC: Error in names(res) <- nms
ChIPQC
chip-seq
7.1 years ago
nbkingsley
• 0
5
votes
11
replies
2.5k
views
ChIPQC Error in .Call2 NCList object is too deep
ChIPQC
updated 7.2 years ago by
Thomas Carroll
▴ 420 • written 7.2 years ago by
Victor Goitea
▴ 10
0
votes
1
reply
1.7k
views
Can ChIPQC analyze mandarin duck ChIP-Seq data?
ChIPQC
updated 7.3 years ago by
Thomas Carroll
▴ 420 • written 7.3 years ago by
Gary
▴ 20
0
votes
4
replies
1.9k
views
Unhelpful Errors Running ChIPQC on Computing Cluster
chipqc
chipqcreport
7.4 years ago • updated 7.3 years ago
jared.andrews07
▴ 30
0
votes
0
replies
1.0k
views
ChIPQC stops at chr3 for calculating shift
chipqc
7.3 years ago
psudyant
• 0
2
votes
5
replies
2.1k
views
Diffbind: dba.plot retrieve variance explained
diffbind
chipqc
updated 7.3 years ago by
Rory Stark
★ 5.2k • written 7.4 years ago by
ZheFrench
▴ 60
3
votes
12
replies
4.3k
views
ChIPQC failling when run ChIPQC() over 6 samples
chipqc
updated 7.4 years ago by
Thomas Carroll
▴ 420 • written 9.8 years ago by
atisou
• 0
0
votes
3
replies
1.5k
views
ChiPQC run time error
ChiPQC
updated 7.5 years ago by
Thomas Carroll
▴ 420 • written 7.5 years ago by
NANADAWONG
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D
by
James W. MacDonald
67k
How you analyze your data is up to you. But do note that Subset * Conditions implies that you want to find genes that respond to stimulus d…
Comment: MBDseq analysis using qsea package
by
kf
• 0
Hi Matthias, Happy new year! I wondered if it is possible to retrieve normalized value from each samples? makeTable seems only return beta…
Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D
by
Quang
• 0
Hi, James. I forgot to mention, but yes, I did run `DESeq2::DESeq()`. So, I ran `DESeq2::DESeqDataSetFromHTSeqCount`, then `DESeq2::DESeq()…
Answer: Why did PCA plots look exactly the same after adjusting for batch covariate in D
by
ATpoint
★ 4.6k
It's an FAQ in the vignette: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#why-after-vst-are-there-s…
Comment: Deseq2, enrichGO and ensembl ID
by
James W. MacDonald
67k
I am not sure I understand. You say that a unique Ensembl ID maps to multiple gene symbols. That doesn't mean you have two genes (it's just…
Votes
A: Trajectory analysis for single cell sequencing
Answer: Annotation with org.Hs.eg.db Genome Build 38
Answer: Annotation with org.Hs.eg.db Genome Build 38
Answer: Considerations behind the choice of RNAseq Differential Expression Analysis Tool
A: goana limma- extract list of DE genes and genes in the enriched GO terms?
Awards
• All
Popular Question
to
nurkenber
• 0
Popular Question
to
Dario Strbenac
★ 1.5k
Popular Question
to
Levi Waldron
★ 1.1k
Scholar
to
Michael Love
43k
Popular Question
to
Ken C
• 0
Locations
• All
United States,
1 hour ago
United States,
1 hour ago
New Zealand,
2 hours ago
United States,
3 hours ago
United States,
3 hours ago
Traffic: 626 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6