Showing : CATALYST • reset
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Catalyst::cluster function does NOT produce the same results when setting seed
visua Visualization CATALYST
14 months ago elefth.pavlos ▴ 40
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2
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911
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Invalid spillover matrix with values greater than 1
CATALYST
updated 18 months ago by ▴ 360 • written 2.5 years ago by • 0
2
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3
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3.2k
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Keep getting this error "Warning: unable to access index for repository"?
CATALYST
updated 21 months ago by 16k • written 21 months ago by ▴ 20
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648
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data truncation with sce2fcs()
CATALYST
23 months ago Shaun • 0
2
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2
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1.5k
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Unable to download CATALYST
CATALYST
2.6 years ago David • 0
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3
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1.4k
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singlecellexperiments markers after clustering
CATALYST SingleCellExperiment
updated 4.2 years ago by ▴ 70 • written 4.2 years ago by • 0
2
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2
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1.7k
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Updating package CATALYST
CATALYST cytofWorkflow
updated 5.2 years ago by 25k • written 5.2 years ago by • 0
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1
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1.3k
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Error after assignPrelim(), CyTOF compenstation
CATALYST flowCore assignPrelim Error in vapply read.FCS
6.0 years ago j.krop • 0
8 results • Page 1 of 1
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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies by ATpoint ★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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