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CAGEr
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0
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41
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Spam:
Can I cancel my British Airways flight and get a refund?
CAGEr
gep2pep
hcg110.db
7 days ago
Haggu
10
6
votes
8
replies
1.7k
views
CAGEr bug report: wrong consensus cluster results
CAGEr
updated 20 months ago by
Charles Plessy
▴ 180 • written 2.3 years ago by
Meng
▴ 30
0
votes
3
replies
1.3k
views
CAGEr: Problem when running getCTSS
CAGEr
updated 3.4 years ago by
Charles Plessy
▴ 180 • written 3.6 years ago by
Sergio
• 0
1
vote
2
replies
1.1k
views
CAGEexp vs CAGErseq
CAGEr
updated 3.4 years ago by
Charles Plessy
▴ 180 • written 4.0 years ago by
MatteoP
▴ 10
0
votes
0
replies
612
views
CAGEr consensusClustersDESeq2()
CAGEr
4.0 years ago
MatteoP
▴ 10
0
votes
5
replies
1.4k
views
CAGEr promoter width graph
CAGEr
updated 3.6 years ago by
Charles
• 0 • written 4.5 years ago by
leehami7407
• 0
1
vote
4
replies
1.1k
views
CAGEr quantilePositions() takes forever to run
CAGEr
quantilePositions
4.9 years ago
mirkocelii
▴ 40
1
vote
6
replies
1.6k
views
Behaviour of getCTSS on a CAGEset - extra reads?
cager
cage
ctss
updated 4.9 years ago by
Charles Plessy
▴ 180 • written 5.7 years ago by
sarac
▴ 20
1
vote
3
replies
1.1k
views
CAGEr: Quantile Values (q_0.1 and q_0.9) in CAGEset / CAGEexp objects
CAGEr
CAGEset
quantile
CAGEexp
4.9 years ago
mirkocelii
▴ 40
4
votes
6
replies
1.6k
views
CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width(x) cannot contain negative integers
CAGEr
IRanges
aggregateTagClusters
4.9 years ago
mirkocelii
▴ 40
2
votes
5
replies
1.6k
views
Does `clusterCTSS` and `aggregateTagClusters` sum raw-tag counts (and tpm) of the clustered tags into the resultant cluster?
CTSS clustering
tag per million
tag counts
CAGEr
updated 3.4 years ago by
Charles Plessy
▴ 180 • written 5.8 years ago by
regcastillo1990
• 0
0
votes
0
replies
1.2k
views
CAGEr get TSS in bed file
TSS
promoter
cage
cager
6.4 years ago
bharata1803
▴ 60
0
votes
1
reply
1.1k
views
a problem from import CTSStable in CAGEr
cager
CAGEr
6.4 years ago
Zhong JW
• 0
1
vote
2
replies
1.6k
views
error: getCTSS from CAGEexp class with removeFirstG=TRUE
cager
6.5 years ago
Pengcheng Yang
▴ 60
9
votes
18
replies
2.9k
views
bam2CTSS function error from CAGEr package
cager
6.5 years ago
Pengcheng Yang
▴ 60
4
votes
5
replies
1.5k
views
no import.bam function in CAGEr version 1.22.3
cager
6.5 years ago
Pengcheng Yang
▴ 60
1
vote
1
reply
1.1k
views
CAGEr: consensusCluster doesn't have dominant CTSS info
cager
6.8 years ago
Jingwen
▴ 10
0
votes
1
reply
1.3k
views
CAGEr - How to change plot axis range in CAGEr
BRAIN
CAGEr
BRAIN
CAGEr
updated 6.9 years ago by
Charles Plessy
▴ 180 • written 10.7 years ago by
Tobias Hohenauer
▴ 10
1
vote
1
reply
1.3k
views
clusterCTSS() error when running CAGEr
CAGEr
updated 7.5 years ago by
Charles Plessy
▴ 180 • written 7.5 years ago by
bo_yan
▴ 10
2
votes
8
replies
2.4k
views
CAGEr BAM files size issue
CAGEr
BAM
software error
R
biostrings
updated 7.7 years ago by
Charles Plessy
▴ 180 • written 7.7 years ago by
orzechowska.mag
▴ 10
4
votes
5
replies
2.5k
views
CAGEr : problem while filtering the bamFile
CAGEr
cage
updated 3.6 years ago by
jingxian.18
• 0 • written 9.1 years ago by
Vivek.b
▴ 100
0
votes
1
reply
1.2k
views
Scale Y-axis in "plotInterquantileWidth" function for an easier comparison between conditions
CAGEr
updated 10.2 years ago by
James W. MacDonald
68k • written 10.2 years ago by
calibula2000
• 0
22 results • Page
1 of 1
Recent ...
Replies
Comment: Co-occurrence Network Analysis between Algae and Bacteria
by
solarsunyy
• 0
Deploy powerful missiles that generate large-scale explosions, resulting in the [solar smash online][1] formation of substantial craters on…
Comment: Phyloseq: How to add sample table to phyloseq object
by
chillykean
• 0
@[Chill Guy Clicker][1]: You can add sample_table by creating a data frame containing sample information and using sample_data(myobject) <-…
Comment: Issue with Soft-Thresholding in WGCNA
by
dirty.cougar.risi
• 0
Interesting data! Looking at these genes, it's like navigating a complex maze. The fluctuating values remind me of chasing high scores in […
Answer: compute_fasta_digest does not match Salmon index hash
by
Michael Love
43k
Can you provide more details on when this is happening? The salmon index is the definitive hash associated with the quant files, so I'm con…
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
by
James W. MacDonald
68k
Oh wait. You want to map from Ensembl to NCBI? That's hard to do with model organisms, let alone non-model. This `OrgDb` doesn't have Ensem…
Votes
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
what the test method for enrichGO in clusterProfiler?
A: single-cells RNA-seq analysis by MAST with unbalanced group size
Comment: plyranges: find exact GRanges match keeping metadata columns
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