Showing : Bsmooth • reset
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BSmooth does give DMRs without no replicate data sets
bsmooth without replicate dimension
6.3 years ago nilaycan • 0
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6
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2.1k
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BSmooth 'names' attribute must be the same length as the vector
bsseq bsmooth
7.1 years ago ravi.tharakan • 0
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0
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1.2k
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bsseq - dmrFinder error
bsseq r package bsmooth dmrFinder
7.4 years ago parker • 0
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6
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2.2k
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BSmooth error during the smoothing step for a subset of files
bsseq bsmooth
updated 7.6 years ago by ▴ 740 • written 7.7 years ago by • 0
1
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3
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1.5k
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BSmooth: mclapply error when smoothing using BSmooth
bsseq bsmooth
7.8 years ago zuupcat • 0
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3
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2.8k
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How to handle BSsmooth.tstat for single replicate samples? Error: need at least two non-NA values to interpolate
bsseq Bsmooth
updated 12 months ago by • 0 • written 9.7 years ago by • 0
6 results • Page 1 of 1
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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
thank you for your advice, I posted separate post.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
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C: DESeq2 baseMean values for each sample
C: DESeq2 baseMean values for each sample
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
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