Showing : BiocVersion • reset
0
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2
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636
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Can't download Bioconductor
BiocVersion
updated 14 months ago by ★ 4.7k • written 14 months ago by • 0
1
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1
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1.1k
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Deploying to shinyapps.io returns error for BiocVersion and phangorn packages
BiocVersion phangorn ShinyApps
updated 16 months ago by 68k • written 16 months ago by • 0
0
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2
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774
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can't update bioconductor 3.18
BioCor bioc BiocVersion
16 months ago feifan • 0
1
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9
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2.2k
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Why is OrgDb linked to specific biocversion? / How to analyze old datasets?
BiocVersion OrgDb clusterProfiler
2.3 years ago MK • 0
0
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5
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1.7k
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Trouble with DESeqDataSetFromMatrix
BiocVersion
updated 3.6 years ago by 4.1k • written 3.6 years ago by • 0
1
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1
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5.3k
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package ‘destiny’ is not available for Bioconductor version '3.13'
destiny BiocVersion
updated 3.7 years ago by 4.1k • written 3.7 years ago by ▴ 10
0
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2
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1.6k
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Install older version of DESeq2 for use on cluster with older version of R
DESeq2 BiocVersion
updated 3.7 years ago by • 0 • written 3.7 years ago by • 0
2
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0
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1.1k
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News: New Bioconductor Community Advisory Board Members for 2021
bioconductoroversight news community BiocVersion
3.9 years ago Matthew Ritchie ▴ 1000
1
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3
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1.2k
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Why is Bioconductor telling me to add an unreleased dependency of R 4.1 in my package ?
versions BiocVersion dependencies
updated 4.0 years ago by 4.1k • written 4.0 years ago by • 0
4
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1
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2.5k
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News: Join the Bioconductor Community Advisory Board
bioconductoroversight community BiocVersion news
updated 4.0 years ago by • 0 • written 4.1 years ago by ▴ 1000
0
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0
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959
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Job: Job: Product-focused Bioinformatician
massgeek Reactome Proteomics STRINGdb
4.3 years ago paula • 0
6
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9
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2.9k
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Install Bioconductor 3.7
docker BiocManager BiocVersion
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 90
12 results • Page 1 of 1
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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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Popular Question to Matthew McCormack ▴ 180
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