Showing : BioNERO • reset
2
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bioNeuro plot_expression_profile - how to order samples in plot output
plot_expression_profile BioNERO
16 months ago Christopher ▴ 20
1
vote
4
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716
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BioNero - problem with module_trait_cor function
BioNERO
17 months ago matevz.likar • 0
1
vote
1
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613
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BioNERO and Cystoscope
#BioNERO BioNERO Cystoscope
updated 23 months ago by ▴ 40 • written 23 months ago by • 0
0
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1
reply
698
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Filter the GRN networks based on the optimal scale-free topology (SFT)
GRN BioNERO
updated 23 months ago by ▴ 40 • written 24 months ago by • 0
0
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2
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1.0k
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Data processing with BioNERO
BioNERO Pviz
2.1 years ago • updated 23 months ago zxd95 • 0
0
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3
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1.3k
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Issue with module-trait analysis in BioNero
BioNERO
updated 2.3 years ago by ▴ 40 • written 2.3 years ago by • 0
6 results • Page 1 of 1
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Comment: GSVA on RNAseq data by Bob ▴ 10
Hi Robert, We were actually very interested in this problem in particular. It seems that using counts for gene sets with varying gene leng…
Comment: plyranges: find exact GRanges match keeping metadata columns by Michael Love 43k
But I will say if you are doing a lot of these, and require exact match, just making it a simple key -- eg `paste0(start,".",end)` -- seems…
Answer: Comparing Mock vs Infected in WT and Knockout Cells by Michael Love 43k
I recommend for questions about statistical analysis plan to meet with a local statistician or someone familiar with linear models in R. I …
Answer: In WGCNA, what networkType should be used in pickSoftThreshold for a Signed Nowi by ATpoint ★ 4.6k
WGCNA is no Bioconductor package. Consider biostars.org or bioinformatics Reddit, but if you do show a bit more effort please. People appre…
Answer: Error: lexical error: invalid char in json text (alevin-seurat) by ATpoint ★ 4.6k
Two things: 1) See https://bioconductor.org/packages/release/bioc/vignettes/tximport/inst/doc/tximport.html#Alevin -- Your `colon_file`…
Votes
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
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