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BioNERO
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bioNeuro plot_expression_profile - how to order samples in plot output
plot_expression_profile
BioNERO
13 months ago
Christopher
▴ 20
1
vote
4
replies
657
views
BioNero - problem with module_trait_cor function
BioNERO
15 months ago
matevz.likar
• 0
1
vote
1
reply
566
views
BioNERO and Cystoscope
#BioNERO
BioNERO
Cystoscope
updated 20 months ago by
Fabricio Almeida-Silva
▴ 40 • written 20 months ago by
Hasani
• 0
0
votes
1
reply
658
views
Filter the GRN networks based on the optimal scale-free topology (SFT)
GRN
BioNERO
updated 20 months ago by
Fabricio Almeida-Silva
▴ 40 • written 21 months ago by
majeedaasim
• 0
0
votes
2
replies
988
views
Data processing with BioNERO
BioNERO
Pviz
23 months ago • updated 21 months ago
zxd95
• 0
0
votes
3
replies
1.2k
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Issue with module-trait analysis in BioNero
BioNERO
updated 2.1 years ago by
Fabricio Almeida-Silva
▴ 40 • written 2.1 years ago by
Biologist
• 0
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Answer: Deseq2 res Function
by
Michael Love
43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
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Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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