Bioconductor BigWig

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1.6k

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DESeq2 edgeR bigwig limma

21 months ago • updated 17 months ago Bogdan ▴ 670

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1.7k

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bedgraph wiggleplotr bigwig wig

updated 22 months ago by complaintguide • 0 • written 22 months ago by Bogdan ▴ 670

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1.4k

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bigWig RNASeqData

2.4 years ago bas_work ▴ 30

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1.8k

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software error BigWig import windows

4.3 years ago lsilva.m • 0

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1.7k

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wiggleplotr bigwig coverage ngs

updated 6.8 years ago by kaur.alasoo ▴ 30 • written 6.8 years ago by borgmichael • 0

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3.1k

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bigwig rtracklayer import granges grangeslist

updated 6.9 years ago by Michael Lawrence ★ 11k • written 6.9 years ago by Assa Yeroslaviz ★ 1.5k

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1.2k

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rtracklayer bigwig import

updated 7.7 years ago by Michael Lawrence ★ 11k • written 7.7 years ago by zx8754 ▴ 10

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1.4k

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bigwig rtracklayer export.bw

updated 7.7 years ago by Michael Lawrence ★ 11k • written 7.7 years ago by story.benjamin ▴ 20

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2.3k

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rtracklayer bigwig

updated 8.4 years ago by laurent.lacroix ▴ 30 • written 8.4 years ago by koneill ▴ 30

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1.2k

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rtracklayer BigWig

updated 8.6 years ago by Michael Lawrence ★ 11k • written 8.6 years ago by dborgesrmit • 0

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Comment: limma comparison for small sample size and how to get covariance matrix by Gordon Smyth 51k

Your MDS plot is better than before, but you are still not following the recommendation for making for making such plots given in the limma…

Comment: Mapping Between GenBank ID's and Uniprot by James W. MacDonald 66k

Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…

Comment: Mapping Between GenBank ID's and Uniprot by James W. MacDonald 66k

Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…

Answer: Mapping Between GenBank ID's and Uniprot by James W. MacDonald 66k

The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.

Answer: XCMS2 of orbitrap data by Elodie • 0

Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…

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Answer: EPIC array hg38 annotation?

Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some

Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: Ranking the GSEA Results

Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)

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