Showing : BigWig • reset
0
votes
1
reply
2.0k
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bigwig to counts
DESeq2 edgeR bigwig limma
2.2 years ago • updated 23 months ago Bogdan ▴ 670
0
votes
2
replies
2.2k
views
converting bedgraph into bigwig
bedgraph wiggleplotr bigwig wig
updated 2.3 years ago by • 0 • written 2.4 years ago by ▴ 670
0
votes
1
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1.7k
views
'Negative' and 'Positive' bigWig RNAseq files: how to deal with these???
bigWig RNASeqData
2.9 years ago bas_work ▴ 30
0
votes
5
replies
2.1k
views
rtracklayer::import() BigWig issue on windows (solved)
software error BigWig import windows
4.8 years ago lsilva.m • 0
0
votes
1
reply
2.2k
views
Plotting bigwig coverage over chromosomal coordinates with wiggleplotr
wiggleplotr bigwig coverage ngs
updated 7.2 years ago by ▴ 30 • written 7.2 years ago by • 0
3
votes
15
replies
3.5k
views
(Big)wig file of complete chromosome
bigwig rtracklayer import granges grangeslist
updated 7.4 years ago by ★ 11k • written 7.4 years ago by ★ 1.5k
2
votes
1
reply
1.3k
views
Strange first_time object in rtracklayer import
rtracklayer bigwig import
updated 8.1 years ago by ★ 11k • written 8.1 years ago by ▴ 10
2
votes
3
replies
1.6k
views
rtracklayer - export.bw bug
bigwig rtracklayer export.bw
updated 8.2 years ago by ★ 11k • written 8.2 years ago by ▴ 20
3
votes
9
replies
2.6k
views
export.bw produces enormous files (10^5 times bigger than they should be)
rtracklayer bigwig
updated 8.9 years ago by ▴ 30 • written 8.9 years ago by ▴ 30
0
votes
2
replies
1.4k
views
Rtracklayer creating large temp files when importing BigWigs
rtracklayer BigWig
updated 9.1 years ago by ★ 11k • written 9.1 years ago by • 0
10 results • Page 1 of 1
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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0
Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…
Comment: PCA of different bacterial species by Jeremy • 0
Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…
Comment: RnBeads::combine() - error? by Urotree • 0
pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…
Comment: RnBeads::combine() - error? by Urotree • 0
![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…
Comment: RnBeads::combine() - error? by Urotree • 0
rnb.set.biseq <- RnBiseqSet( pheno = pheno, sites = sites, meth = meth, covg = NULL, # This can be NULL if coverage …
Votes
Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
scater/scran with TPMs from Salmon - counts?
A: Full length single-cell RNA-seq - tximport output for downstream analysis
Answer: Understanding tximport working with salmon outputs
Answer: enrichGOgradient color change
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