Showing : BayesPeak • reset
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[bug] BayesPeak cannot deal with RangedData input
BayesPeak bug
8.5 years ago balwierz ▴ 40
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3
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1.3k
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Error in bayespeak function importing data
bayespeak
9.5 years ago Reed ▴ 10
8
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9
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6.8k
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ChIPseq-style peak calling for paired-end sequencing?
Chipseq DNAseq ATAC bayespeak narrowpeaks
updated 9.7 years ago by 52k • written 9.8 years ago by ▴ 140
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8
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2.2k
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chip-seq data
ChIPSeq chipseq BayesPeak ChIPSeq chipseq BayesPeak
12.4 years ago John linux-user ▴ 210
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1
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1.2k
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Question about ChIPpeakAnno R package
AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno
12.5 years ago Julie Zhu ★ 4.3k
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1.1k
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Upgrade bioconductor to version 2.6
BayesPeak BayesPeak
13.5 years ago Mary Ellen Fitzpatrick ▴ 20
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7
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2.1k
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error in bayespeak function
ChIPSeq GO BSgenome BSgenome chipseq BayesPeak ChIPSeq GO BSgenome BSgenome chipseq
updated 13.6 years ago by ▴ 130 • written 13.6 years ago by ▴ 810
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1
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1.2k
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BayesPeak and RangedData obj output
BayesPeak BayesPeak
updated 14.3 years ago by ▴ 130 • written 14.3 years ago by ▴ 30
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4
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1.9k
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BayesPeak segfault woes
BayesPeak BayesPeak
updated 14.7 years ago by ▴ 130 • written 14.7 years ago by ▴ 270
9 results • Page 1 of 1
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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
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The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
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> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
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