Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Batch Correction
•
reset
3
votes
3
replies
1.6k
views
fastMNN based correction for large multi-run experiment requires a similar population set in all the individual datasets?
scrna-seq
integration
batch correction
updated 4.5 years ago by
Aaron Lun
★ 28k • written 4.5 years ago by
p.joshi
▴ 40
0
votes
1
reply
1.0k
views
Batch correction in Linear Models for methylation data
methylation
ComBat
Linear models
batch correction
AIC
updated 4.6 years ago by
Kevin Blighe
★ 3.9k • written 4.6 years ago by
lucasmiranda42
• 0
5
votes
3
replies
640
views
batch correction in DESeq2 > matrix not full rank > mitigate
DESeq2
batch correction
updated 4.6 years ago by
James W. MacDonald
66k • written 4.6 years ago by
MT
▴ 10
0
votes
3
replies
985
views
Diffbind batch effect blocking error
Diffbind
ATAC
batch correction
blocking factor
updated 4.9 years ago by
Rory Stark
★ 5.2k • written 4.9 years ago by
rm1238
• 0
1
vote
1
reply
1.0k
views
All Pairwise Comparisons with DESeq2 While Controlling for Batch Effects: Does Reference Level Matter?
deseq2
differential expression
batch correction
design
updated 5.0 years ago by
Michael Love
42k • written 5.1 years ago by
wunderl
▴ 40
4
votes
4
replies
1.4k
views
Batch Correction: DESeq2 Linear Model vs Batch-Correction-Specific Algorithms (RUV, ComBat, ect.)
deseq2
differential expression
batch correction
updated 5.1 years ago by
Michael Love
42k • written 5.1 years ago by
wunderl
▴ 40
4
votes
5
replies
1.8k
views
Using SC3 with batch corrected MNN values
SC3
Scater
Scran
scRNA-Seq
Batch Correction
updated 5.2 years ago by
Vladimir Kiselev
▴ 150 • written 5.2 years ago by
hamza_karakurt
▴ 60
7 results • Page
1 of 1
Recent ...
Replies
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 260
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 260
Where did you see ranking of genes by log2FC * (-log10 p-value)? I don't think I ever saw one and not sure what it should achieve. Aren't y…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Answer: LRT test for different timepoints (one tissue types vs. many tissue types)
by
Michael Love
42k
No, this is a contrast of estimated coefficient (e.g. the Wald test).
Votes
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
Awards
• All
Popular Question
to
ATpoint
★ 4.2k
Popular Question
to
WouterDeCoster
▴ 130
Scholar
to
Gordon Smyth
51k
Voter
to
Chris
▴ 20
Popular Question
to
Jitendra
▴ 10
Locations
• All
United States,
1 minute ago
St Louis, MO,
2 minutes ago
United States,
3 minutes ago
China,
8 minutes ago
United States,
8 minutes ago
Traffic: 1358 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6