Showing : Batch Correction • reset
3
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fastMNN based correction for large multi-run experiment requires a similar population set in all the individual datasets?
scrna-seq integration batch correction
updated 5.1 years ago by ★ 28k • written 5.1 years ago by ▴ 40
0
votes
1
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1.4k
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Batch correction in Linear Models for methylation data
methylation ComBat Linear models batch correction AIC
updated 5.2 years ago by ★ 4.0k • written 5.2 years ago by • 0
5
votes
3
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820
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batch correction in DESeq2 > matrix not full rank > mitigate
DESeq2 batch correction
updated 5.3 years ago by 68k • written 5.3 years ago by ▴ 10
0
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3
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1.2k
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Diffbind batch effect blocking error
Diffbind ATAC batch correction blocking factor
updated 5.6 years ago by ★ 5.2k • written 5.6 years ago by • 0
1
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1
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1.2k
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All Pairwise Comparisons with DESeq2 While Controlling for Batch Effects: Does Reference Level Matter?
deseq2 differential expression batch correction design
updated 5.7 years ago by 43k • written 5.7 years ago by ▴ 40
4
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4
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1.7k
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Batch Correction: DESeq2 Linear Model vs Batch-Correction-Specific Algorithms (RUV, ComBat, ect.)
deseq2 differential expression batch correction
updated 5.7 years ago by 43k • written 5.7 years ago by ▴ 40
4
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5
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2.2k
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Using SC3 with batch corrected MNN values
SC3 Scater Scran scRNA-Seq Batch Correction
updated 5.9 years ago by ▴ 150 • written 5.9 years ago by ▴ 60
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Comment: graper 1.22 Build is Broken by shepherl 4.1k
This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …
Comment: graper 1.22 Build is Broken by shepherl 4.1k
This post does not fit the theme of this forum.
Comment: Unbalanced experiment with multiple samples from each patient. by canarias • 0
Hi Aaron, I'm faced with an analysis that has basically the same problem as OP had, but is probably even more unbalanced: In most cases, I…
Comment: Gene Set Enrichment Analysis in Bioconductor course by info ▴ 10
If you are interested in Gene Set Enrichment Analysis in R, you can still join us next week for this 4-day Physalia course on GSEA in R and…
Comment: cannot download atena annotation for human by Davide • 0
That's the error that comes up: > rmskann <- atena::annotaTEs(genome = "hg38", parsefun = "rmskbasicparser") Connecting to the Ann…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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