Bioconductor Batch Correction

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2.0k

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scrna-seq integration batch correction

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by p.joshi ▴ 40

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1.4k

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methylation ComBat Linear models batch correction AIC

updated 5.3 years ago by Kevin Blighe ★ 4.0k • written 5.3 years ago by lucasmiranda42 • 0

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846

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DESeq2 batch correction

updated 5.4 years ago by James W. MacDonald 68k • written 5.4 years ago by MT ▴ 10

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1.2k

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Diffbind ATAC batch correction blocking factor

updated 5.7 years ago by Rory Stark ★ 5.2k • written 5.7 years ago by rm1238 • 0

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1.2k

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deseq2 differential expression batch correction design

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by wunderl ▴ 40

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1.8k

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deseq2 differential expression batch correction

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by wunderl ▴ 40

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2.3k

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SC3 Scater Scran scRNA-Seq Batch Correction

updated 6.0 years ago by Vladimir Kiselev ▴ 150 • written 6.0 years ago by hamza_karakurt ▴ 60

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Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

Comment: Question on displaying color photo as Greyscale in EBImage by Albert • 0

great and very nice

Comment: European Bioconductor Conference 2023 planning by Pandora • 0

The [Tag Game][1] is not just a simple chase; it involves strategy and tactics as players must think quickly to avoid being tagged. Various…

Comment: Generalized edgeR functions by bukarimanches • 0

I have estimated the new parameter set, it doesn't seem as useful as I thought [geometry dash lite][1] [1]: https://geometry-lite.com/

Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by Morse • 0

[Geometry Dash Lite][1] is the free version of the famous Geometry Dash series. It was made by RobTop Games and lets players enjoy the thri…

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Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

what the test method for enrichGO in clusterProfiler?

Awards • All

Scholar to Michael Love 43k