Bioconductor BSgenomeForge

Showing : BSgenomeForge • reset

votes

237

views

BSgenomeForge non-modelorganism unabletofindFTPdir

updated 5 weeks ago by Hervé Pagès 16k • written 5 weeks ago by Geetha • 0

votes

replies

512

views

BSgenomeForge

15 months ago Bruno • 0

votes

replies

1.9k

views

BSgenomeForge BSgenome

updated 18 months ago by James W. MacDonald 67k • written 18 months ago by kyliecode • 0

votes

replies

2.0k

views

BSGenomeForge BSGenome

updated 3.7 years ago by Hervé Pagès 16k • written 3.7 years ago by sieminsk • 0

votes

replies

1.8k

views

cleanUpdTSeq BSgenome BSgenomeForge

updated 5.8 years ago by Julie Zhu ★ 4.3k • written 5.8 years ago by danielle.bilodeau • 0

votes

replies

1.3k

views

BSgenomeForge

8.2 years ago • updated 8.1 years ago Vijay Lakhujani • 0

6 results • Page 1 of 1

Recent ...

Replies

Answer: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Just fit a model `~condition + experiment` where `condition` has three levels A, B and C. Ideally, use limma and include duplicate correlat…

Comment: Error in get_anno_data(ontology) : ontology not supported yet... by GODseeker • 0

thank u so much ,god bless u,my dear friend.

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi @gordonsmyth and @weishi, Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Hi Tim, Thanks for your reply! Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …

Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k

Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…

Votes

Comment: Feature Counts - potential bug with outfile.jcounts

Answer: Feature Counts - potential bug with outfile.jcounts

Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

DiffBind giving different results from dba.report() and dba.analyze(..., bRetrieveAnalysis=TRUE)

Awards • All

Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k