Bioconductor BSgenomeForge

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BSgenomeForge non-modelorganism unabletofindFTPdir

updated 4 months ago by Hervé Pagès 16k • written 4 months ago by Geetha • 0

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565

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BSgenomeForge

19 months ago Bruno • 0

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2.4k

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BSgenomeForge BSgenome

updated 22 months ago by James W. MacDonald 68k • written 22 months ago by kyliecode • 0

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2.1k

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BSGenomeForge BSGenome

updated 4.0 years ago by Hervé Pagès 16k • written 4.0 years ago by sieminsk • 0

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2.0k

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cleanUpdTSeq BSgenome BSgenomeForge

updated 6.1 years ago by Julie Zhu ★ 4.3k • written 6.1 years ago by danielle.bilodeau • 0

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1.4k

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BSgenomeForge

8.5 years ago • updated 8.4 years ago Vijay Lakhujani • 0

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Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Thanks that's great!! I've followed the instructions from the link you sent, is my code correct? By correct I mean, is my code comparing fo…

Comment: SingleR with multiple single cell references by maltethodberg ▴ 180

Great - the approach with merging the atlases and using `block=` worked well!

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

Underpowerment and notable noise/variability, that's the answer.

Comment: DESeq - help with pair wise comparisons by ATpoint ★ 4.8k

It's exactly this, no? https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#group-specific-condition-effect…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Sorry for the repetitive questions! I'm actually just trying to understand it better so that I can explain to the wet lab biologists in my …

Votes

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder

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