Showing : BSSeq • reset
4
votes
9
replies
1.2k
views
Memory errors using read.bismark?
dmrseq bsseq
11 months ago • updated 10 months ago Juan Higareda • 0
0
votes
1
reply
642
views
No output from read.bismark with bismark cov.files
bsseq methylation
updated 11 months ago by 68k • written 11 months ago by • 0
6
votes
5
replies
1.9k
views
error message when I use the bsseq read.bismark command to read a genome wide cytosine report generated by bismark.
bsseq
updated 18 months ago by ▴ 750 • written 19 months ago by ▴ 30
1
vote
3
replies
2.6k
views
read.bismark() ->Error in manager$availability[[as.character(result$node)]] <- TRUE : wrong args for environment subassignment
methylSig bsseq
updated 2.5 years ago by ▴ 750 • written 2.5 years ago by • 0
0
votes
2
replies
1.2k
views
Locating nearest genes in RRBS analysis
hiAnnotator bsseq DifferentialMethylation edgeR RRBSdata
2.8 years ago Mageiros • 0
0
votes
1
reply
1.9k
views
Gene level methylation values
methylation methylKit bsseq
updated 3.4 years ago by ▴ 10 • written 3.7 years ago by ▴ 80
0
votes
0
replies
989
views
DSS smoothing RRBS and strand collapse
DSS BSSeq
5.0 years ago stephanie.rialle • 0
0
votes
1
reply
1000
views
Varying results from DSS when specifying different BSobj
DSS DSS-single bsseq
updated 5.4 years ago by 68k • written 5.4 years ago by • 0
0
votes
3
replies
1.5k
views
Determination of Hypo- or Hyper- methylation
dmrseq bsseq
updated 6.8 years ago by 68k • written 6.8 years ago by • 0
1
vote
2
replies
1.3k
views
Request to remove requirement for gr to have widths 1 in BSseq constructor
bsseq r package
updated 6.8 years ago by • 0 • written 6.8 years ago by ▴ 140
7
votes
5
replies
2.2k
views
Strange error in bsseq when trying to assign seqinfo
bsseq genomeinfodb genomicranges seqinfo
written 6.8 years ago by ▴ 140
0
votes
6
replies
2.2k
views
BSmooth 'names' attribute must be the same length as the vector
bsseq bsmooth
7.4 years ago ravi.tharakan • 0
1
vote
6
replies
2.1k
views
Unusually long running times for getMeth function since latest release
bsseq delayedarray
updated 7.7 years ago by ▴ 750 • written 7.7 years ago by ★ 1.9k
2
votes
3
replies
2.0k
views
bsseq combineList: how to get an HDF5Array-backed object as return value?
bsseq
updated 7.8 years ago by ▴ 750 • written 7.8 years ago by ▴ 20
0
votes
4
replies
2.2k
views
Error while smoothing BS-seq data with bsseq
bsseq
updated 7.9 years ago by • 0 • written 9.4 years ago by • 0
0
votes
6
replies
2.4k
views
BSmooth error during the smoothing step for a subset of files
bsseq bsmooth
updated 7.9 years ago by ▴ 750 • written 8.0 years ago by • 0
0
votes
1
reply
1.5k
views
warning message with BSseq function
bsseq
updated 8.0 years ago by ★ 6.5k • written 8.0 years ago by • 0
1
vote
3
replies
1.6k
views
BSmooth: mclapply error when smoothing using BSmooth
bsseq bsmooth
8.2 years ago • updated 8.1 years ago zuupcat • 0
0
votes
0
replies
1.2k
views
A few questions about BSseq package
bsseq
8.2 years ago Stephen • 0
0
votes
0
replies
1.2k
views
Does bsseq package work with technical replicates?
bsseq WGBS
8.3 years ago Welliton de Souza ▴ 70
4
votes
2
replies
1.7k
views
Bounded Regression with Limma for RRBS?
limma rrbs bsseq
updated 8.7 years ago by ★ 28k • written 8.8 years ago by • 0
0
votes
3
replies
2.1k
views
Is there any way to set bsseq object as 'smoothed'?
bsseq bisulfite
8.9 years ago biohack92 • 0
1
vote
3
replies
2.2k
views
bsseq BSmooth error
bsseq
8.9 years ago enricoferrero ▴ 680
7
votes
11
replies
4.3k
views
t-statistic cutoff for finding DMRs with bsseq
bsseq dmr ttest pvalue
updated 9.1 years ago by 68k • written 9.1 years ago by ▴ 680
1
vote
0
replies
1.9k
views
Multiple linear regression model for DMR detection?
methylation linear model dmr bsseq biseq
9.3 years ago enricoferrero ▴ 680
6
votes
14
replies
5.9k
views
How to correctly import Bismark coverage files into bsseq?
bsseq bismark methylation
9.3 years ago enricoferrero ▴ 680
0
votes
0
replies
2.1k
views
Job: Bioinformatics Data Analyst - IMP/IMBA Vienna
chipseq atac-seq gro-seq bsseq rnaseq Job
9.4 years ago Jaritz,Markus ▴ 20
1
vote
2
replies
2.9k
views
BS-seq differential methylation analysis using continuous variable
dmr methylation deseq2 bsseq biseq
updated 9.4 years ago by ★ 6.5k • written 9.4 years ago by ▴ 680
0
votes
2
replies
2.4k
views
Issue with SummarizedExperiment thru DSS::makeBSseqData
DSS bsseq summarizedexperiment
9.5 years ago Tim Peters ▴ 230
0
votes
4
replies
3.1k
views
Error using Bsmooth.tstat due to NAs
Coverage bsseq
updated 16 months ago by • 0 • written 10.5 years ago by ★ 13k
0
votes
3
replies
2.9k
views
How to handle BSsmooth.tstat for single replicate samples? Error: need at least two non-NA values to interpolate
bsseq Bsmooth
updated 16 months ago by • 0 • written 10.0 years ago by • 0
0
votes
2
replies
2.2k
views
bsmooth and bsseq for RRBS
bsseq bsseq
updated 11.1 years ago by ★ 4.2k • written 11.1 years ago by ★ 13k
1
vote
2
replies
1.7k
views
dmrFinder error
bsseq bsseq
updated 11.4 years ago by ★ 6.5k • written 11.4 years ago by ★ 13k
0
votes
1
reply
1.3k
views
bsseq in devel
bsseq bsseq
updated 11.7 years ago by ★ 4.2k • written 11.7 years ago by ★ 6.5k
0
votes
2
replies
2.3k
views
bsseq and BSmooth with RRBS
Sequencing bsseq Sequencing bsseq
updated 12.1 years ago by ★ 6.5k • written 12.1 years ago by ▴ 650
0
votes
1
reply
1.7k
views
Minimal input data format for bsseq
Sequencing Alignment bsseq Sequencing Alignment bsseq
updated 12.2 years ago by ★ 6.5k • written 12.2 years ago by ▴ 20
0
votes
0
replies
1.3k
views
[package announcement] bumphunter
charm minfi bsseq bumphunter charm minfi bsseq bumphunter
12.3 years ago Kasper Daniel Hansen ★ 6.5k
0
votes
0
replies
1.6k
views
Package announcement: bsseq
Sequencing Alignment Cancer Colon bsseq Sequencing Alignment Cancer Colon bsseq
12.6 years ago Kasper Daniel Hansen ★ 6.5k
38 results • Page 1 of 1
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Replies
Comment: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf by AB ▴ 110
Force=TRUE did the trick. Thank you.
Comment: www.stats.ox.ac.uk seems to be off, leading to errors/delays when installing pac by DENG • 0
[https://github.com/djunsheep/CRANextra/blob/main/README.md][1] add the following to the `.Rprofile` and `Rprofile.site` # fixing the…
Comment: Transcript ID Mismatch in riboWaltz Annotation Table by shepherl 4.1k
riboWalze is not a Bioconductor package and does not appear to be a Bioconductor function; the maintainer is not guaranteed to be on this …
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf by shepherl 4.1k
What is your `sessionInfo()`? I just tried locally and it works fine so there might have been a bad or interrupted download when initially…
Comment: error in ChAMP loading file by shocked.tick.zyet • 0
Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…
Votes
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
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Scholar to shepherl 4.1k
Popular Question to James W. MacDonald 68k
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Popular Question to AB ▴ 110
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