Bioconductor BSGenomeForge

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BSgenomeForge non-modelorganism unabletofindFTPdir

updated 3 months ago by Hervé Pagès 16k • written 3 months ago by Geetha • 0

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BSgenomeForge

17 months ago Bruno • 0

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BSgenomeForge BSgenome

updated 20 months ago by James W. MacDonald 68k • written 20 months ago by kyliecode • 0

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BSGenomeForge BSGenome

updated 3.9 years ago by Hervé Pagès 16k • written 3.9 years ago by sieminsk • 0

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cleanUpdTSeq BSgenome BSgenomeForge

updated 6.0 years ago by Julie Zhu ★ 4.3k • written 6.0 years ago by danielle.bilodeau • 0

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BSgenomeForge

8.4 years ago • updated 8.3 years ago Vijay Lakhujani • 0

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Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k

The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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