Bioconductor BSGenomeForge

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295

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BSgenomeForge non-modelorganism unabletofindFTPdir

updated 3 months ago by Hervé Pagès 16k • written 3 months ago by Geetha • 0

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556

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BSgenomeForge

18 months ago Bruno • 0

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2.3k

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BSgenomeForge BSgenome

updated 21 months ago by James W. MacDonald 68k • written 21 months ago by kyliecode • 0

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2.1k

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BSGenomeForge BSGenome

updated 3.9 years ago by Hervé Pagès 16k • written 3.9 years ago by sieminsk • 0

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1.9k

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cleanUpdTSeq BSgenome BSgenomeForge

updated 6.0 years ago by Julie Zhu ★ 4.3k • written 6.0 years ago by danielle.bilodeau • 0

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1.4k

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BSgenomeForge

8.5 years ago • updated 8.3 years ago Vijay Lakhujani • 0

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Comment: sesameDataCache is not work properly on my system by Samreen • 0

Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…

Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Comment: concentration tables suitable as input for new packages? by wilkinson • 0

I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…

Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k

Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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