Bioconductor Atac

Showing : Atac • reset

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610

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ATACSeq peaks ATAC ChIPpeakAnno

9 months ago Raghad • 0

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1.2k

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rna-seq Read10X_h5 atac modalities

updated 23 months ago by James W. MacDonald 68k • written 23 months ago by Cynthia • 0

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937

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ATAC DiffBind ATACSeq

updated 2.1 years ago by Rory Stark ★ 5.2k • written 2.1 years ago by Hadar • 0

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1.6k

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diffbind atac

updated 4.8 years ago by Rory Stark ★ 5.2k • written 4.8 years ago by lindsaynhayes • 0

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719

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r DiffBind ATAC

updated 5.0 years ago by Rory Stark ★ 5.2k • written 5.0 years ago by lindsaynhayes • 0

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2.0k

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limma edger atac atac-seq

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by pgugger ▴ 70

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977

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deseq2 design formula design matrix edgeR ATAC

updated 5.2 years ago by Gordon Smyth 52k • written 5.2 years ago by corinne_hutfilz • 0

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1.2k

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Diffbind ATAC batch correction blocking factor

updated 5.6 years ago by Rory Stark ★ 5.2k • written 5.6 years ago by rm1238 • 0

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2.2k

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ATACseqQC ATAC ATACseq software error Tutorial

updated 5.7 years ago by Steve Lianoglou ★ 13k • written 5.7 years ago by mbasam • 0

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3.7k

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subread featurecounts atac

updated 5.9 years ago by Wei Shi ★ 3.6k • written 5.9 years ago by aurel.nagy ▴ 10

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1.7k

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diffbind ATACseq ATAC counts differential analysis

updated 6.0 years ago by Rory Stark ★ 5.2k • written 6.0 years ago by pgontarz ▴ 10

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2.6k

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diffbind atac

updated 6.1 years ago by Rory Stark ★ 5.2k • written 6.1 years ago by paz2005 • 0

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6.2k

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diffbind atac

7.8 years ago niu.shengyong ▴ 10

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5.2k

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ATAC differential binding analysis no replicates DEseq2 chromatin

8.0 years ago BioinfGuru ▴ 70

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1.6k

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Diffbind Atac adapters

updated 8.0 years ago by Rory Stark ★ 5.2k • written 8.0 years ago by BioinfGuru ▴ 70

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3.3k

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atac-seq atac deseq2 sva combat

updated 8.0 years ago by Michael Love 43k • written 8.0 years ago by g.atla ▴ 10

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6.8k

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Chipseq DNAseq ATAC bayespeak narrowpeaks

updated 9.8 years ago by Gordon Smyth 52k • written 9.8 years ago by samuel collombet ▴ 140

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Comment: www.stats.ox.ac.uk seems to be off, leading to errors/delays when installing pac by DENG • 0

[https://github.com/djunsheep/CRANextra/blob/main/README.md][1] add the following to the `.Rprofile` and `Rprofile.site` # fixing the…

Comment: Transcript ID Mismatch in riboWaltz Annotation Table by shepherl 4.1k

riboWalze is not a Bioconductor package and does not appear to be a Bioconductor function; the maintainer is not guaranteed to be on this …

Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf by shepherl 4.1k

What is your `sessionInfo()`? I just tried locally and it works fine so there might have been a bad or interrupted download when initially…

Comment: error in ChAMP loading file by shocked.tick.zyet • 0

Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…

Comment: orgDB by jenniferping36 • 0

Thanks for the suggestion! I'll check out the resources.

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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