Bioconductor Atac

Showing : Atac • reset

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685

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ATACSeq peaks ATAC ChIPpeakAnno

11 months ago Raghad • 0

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1.2k

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rna-seq Read10X_h5 atac modalities

updated 2.1 years ago by James W. MacDonald 68k • written 2.1 years ago by Cynthia • 0

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966

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ATAC DiffBind ATACSeq

updated 2.2 years ago by Rory Stark ★ 5.2k • written 2.2 years ago by Hadar • 0

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1.6k

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diffbind atac

updated 4.9 years ago by Rory Stark ★ 5.2k • written 4.9 years ago by lindsaynhayes • 0

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728

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r DiffBind ATAC

updated 5.1 years ago by Rory Stark ★ 5.2k • written 5.1 years ago by lindsaynhayes • 0

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2.0k

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limma edger atac atac-seq

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by pgugger ▴ 70

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996

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deseq2 design formula design matrix edgeR ATAC

updated 5.3 years ago by Gordon Smyth 52k • written 5.4 years ago by corinne_hutfilz • 0

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1.2k

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Diffbind ATAC batch correction blocking factor

updated 5.7 years ago by Rory Stark ★ 5.2k • written 5.7 years ago by rm1238 • 0

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ATACseqQC ATAC ATACseq software error Tutorial

updated 5.8 years ago by Steve Lianoglou ★ 13k • written 5.8 years ago by mbasam • 0

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3.8k

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subread featurecounts atac

updated 6.0 years ago by Wei Shi ★ 3.6k • written 6.0 years ago by aurel.nagy ▴ 10

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1.7k

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diffbind ATACseq ATAC counts differential analysis

updated 6.1 years ago by Rory Stark ★ 5.2k • written 6.1 years ago by pgontarz ▴ 10

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2.7k

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diffbind atac

updated 6.2 years ago by Rory Stark ★ 5.2k • written 6.2 years ago by paz2005 • 0

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diffbind atac

7.9 years ago niu.shengyong ▴ 10

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5.3k

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ATAC differential binding analysis no replicates DEseq2 chromatin

8.1 years ago BioinfGuru ▴ 70

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1.6k

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Diffbind Atac adapters

updated 8.1 years ago by Rory Stark ★ 5.2k • written 8.1 years ago by BioinfGuru ▴ 70

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atac-seq atac deseq2 sva combat

updated 8.1 years ago by Michael Love 43k • written 8.1 years ago by g.atla ▴ 10

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6.9k

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Chipseq DNAseq ATAC bayespeak narrowpeaks

updated 9.9 years ago by Gordon Smyth 52k • written 9.9 years ago by samuel collombet ▴ 140

17 results • Page 1 of 1

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Answer: Version conflict when pushing to scQTLtools devel branch by shepherl 4.1k

There is a Bioconductor release today. There were notifications on the bioc-devel mailing list https://stat.ethz.ch/pipermail/bioc-devel…

Comment: DiffBind can't find a DAR by Mengjun • 0

The details about this question: I have 4 samples with 2 conditions( ctrl_1, ctrl_2, ko_1, ko_2), i use these 4 samples as input. Here is …

Comment: DiffBind can't find a DAR by Mengjun • 0

Thank you very much for pointing out this shortcoming. I will improve it.

Comment: samtools loading in R by Charlie • 0

This is obviously a very late answer but I had a similar error: > sh: samtools: command not found > > sh: samtools: command not found > …

Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by njmcdirect • 0

https://www.www-njmcdirect.run/

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Bioconductor 3.21 is Released!

DiffBind - question on the use of filtered or unfiltered input data

Answer: Enhanced Volcano Error when drawing connectors

Answer: Origin of the labels for the SingleCellMultiModal dataset

Answer: PhD scholar

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Popular Question to Dario Strbenac ★ 1.6k