Bioconductor Ashr

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DESeq2 apeglm DESeq ApeGLM Ashr

updated 18 months ago by Michael Love 43k • written 18 months ago by Ndimensional ▴ 20

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1.4k

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Ashr LFCShrinkage IHW DESeq2

3.1 years ago Bex • 0

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1.8k

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ashr DESeq2 apeglm

updated 3.4 years ago by Michael Love 43k • written 3.5 years ago by Guandong Shang ▴ 40

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1.1k

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ashr DESeq2 lfcShrink svalue

3.9 years ago Enrico • 0

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1.1k

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deseq2 ashr

4.3 years ago da.de ▴ 30

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1.8k

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deseq2 ashr rna-seq

4.8 years ago Alex • 0

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796

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ashr

4.8 years ago kavator ▴ 30

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2.5k

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ashr Deseq2 lfcThreshold

updated 3.3 years ago by Michael Love 43k • written 4.8 years ago by Iryna • 0

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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

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Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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Teacher to Axel Klenk ★ 1.1k