Bioconductor Ashr

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DESeq2 apeglm DESeq ApeGLM Ashr

updated 20 months ago by Michael Love 43k • written 20 months ago by Ndimensional ▴ 20

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1.5k

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Ashr LFCShrinkage IHW DESeq2

3.2 years ago Bex • 0

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1.9k

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ashr DESeq2 apeglm

updated 3.5 years ago by Michael Love 43k • written 3.6 years ago by Guandong Shang ▴ 40

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1.2k

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ashr DESeq2 lfcShrink svalue

4.0 years ago Enrico • 0

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deseq2 ashr

4.4 years ago da.de ▴ 30

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1.9k

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deseq2 ashr rna-seq

4.9 years ago Alex • 0

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835

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ashr

4.9 years ago kavator ▴ 30

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2.7k

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ashr Deseq2 lfcThreshold

updated 3.4 years ago by Michael Love 43k • written 4.9 years ago by Iryna • 0

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Comment: error in ChAMP loading file by shocked.tick.zyet • 0

Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…

Comment: orgDB by jenniferping36 • 0

Thanks for the suggestion! I'll check out the resources.

Comment: sesameDataCache is not work properly on my system by Samreen • 0

Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…

Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Votes

Answer: Differential expression of proteins using somascan data

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Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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