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Anova
•
reset
2
votes
6
replies
2.3k
views
How to make boxplot with pairwise and overall p value from Limma
t.test
boxplot
limma
anova
9 months ago
Chris
▴ 20
2
votes
2
replies
764
views
2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip
MicroarrayData
Anova
2.2 years ago
evan.j.williams
▴ 10
3
votes
4
replies
1.7k
views
Pipeline for an Anova-like analysis in edgeR
edgeR
anova
rna-seq
3.7 years ago
Antonio M.
• 0
2
votes
3
replies
1.8k
views
ANOVA Limma
ANOVA
limma
updated 3.9 years ago by
James W. MacDonald
67k • written 3.9 years ago by
georgina.fqw
▴ 10
1
vote
1
reply
911
views
DESeq2 interactions genotype condition code needed
DESeq2
anova
condition
genotypeeval
updated 4.1 years ago by
ATpoint
★ 4.6k • written 4.1 years ago by
Dan
▴ 20
2
votes
4
replies
3.3k
views
Compare 3 RNASeq groups with no control in DESeq2
anova
RNASeqData
tukeyTest
DESeq2
4.2 years ago
ecg1g15
▴ 30
5
votes
13
replies
3.3k
views
DESeq2 multiple group comparison (ANOVA) with batch effect
DESeq2
DEG
ANOVA
Batch effect
Comparison
updated 5.4 years ago by
Michael Love
43k • written 5.4 years ago by
amin.ghareyazi
• 0
3
votes
3
replies
2.1k
views
Differential Expression Analysis in edgeR using Anova
edger
anova
gene expression
Dispersion
updated 5.6 years ago by
onlychainsaw2019
• 0 • written 6.0 years ago by
ilovesuperheroes1993
• 0
0
votes
1
reply
1.9k
views
edgeR 2-way ANOVA testing
edger
ANOVA
updated 6.2 years ago by
Gordon Smyth
52k • written 6.2 years ago by
martyna.broda
• 0
5
votes
6
replies
1.8k
views
nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
limma
anova
decidetests
updated 6.3 years ago by
Gordon Smyth
52k • written 6.3 years ago by
mikhael.manurung
▴ 280
3
votes
1
reply
1.2k
views
ANOVA-like test via treat() in limma
limma
anova
updated 6.5 years ago by
Gordon Smyth
52k • written 6.5 years ago by
k.vitting.seerup
▴ 120
1
vote
1
reply
1.0k
views
Getting Significance for second factor (bioreplicate/subject) when using limma.
limma
anova
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
wewolski
▴ 10
1
vote
1
reply
915
views
How to calculate one way unpaired Anova test with multi column data in R
Anova
updated 6.8 years ago by
James W. MacDonald
67k • written 6.8 years ago by
raya.girish
• 0
1
vote
8
replies
1.7k
views
design versus interaction term similarities and/or differences?
deseq2
ANOVA
design
interaction term
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
tarun2
• 0
0
votes
3
replies
1.6k
views
Anova test on gene expression data
Anova
gene expression
updated 7.2 years ago by
James W. MacDonald
67k • written 7.2 years ago by
sally_b86
• 0
2
votes
6
replies
2.4k
views
Three way-interaction on voom (limma) data, including a factor with > 2 levels
RNASeq
limma
voom
anova
updated 2.9 years ago by
tcalvo
▴ 100 • written 7.5 years ago by
David R
▴ 90
2
votes
2
replies
2.4k
views
EdgeR -ANOVA-like test vs testing individual contrasts
EdgeR
ANOVA
t-test
contrast
updated 7.6 years ago by
Aaron Lun
★ 28k • written 7.6 years ago by
Maiv
• 0
0
votes
6
replies
5.1k
views
How to perform ANOVA to calculate differential gene expression with three categories
anova
updated 7.6 years ago by
Gordon Smyth
52k • written 7.6 years ago by
pbachali
▴ 50
2
votes
3
replies
2.4k
views
edgeR ANOVA-like analysis
edger
rnaseq
anova
updated 7.8 years ago by
Aaron Lun
★ 28k • written 7.8 years ago by
Tony
• 0
1
vote
4
replies
1.7k
views
DESeq2 ANOVADEV giving strange result
deseq2
anova
updated 8.2 years ago by
Michael Love
43k • written 8.2 years ago by
szenitha
▴ 20
3
votes
3
replies
2.4k
views
Explanation of an ANOVA approach of multiple coefficients in limma with topTable in a microarray analysis
limma
ANOVA
topTable
microarray
updated 8.3 years ago by
Gordon Smyth
52k • written 8.3 years ago by
Konstantinos Yeles
▴ 80
0
votes
5
replies
2.1k
views
MetagenomSeq, perform anova or kruskall wallis with three groups ?
metagenomeseq
anova
metagenomics
8.7 years ago
David
▴ 860
3
votes
4
replies
1.9k
views
how to use edgeR analysis RNA-seq data with a obvious deviation sample
edger
RNA-seq
anova
updated 8.8 years ago by
Aaron Lun
★ 28k • written 8.8 years ago by
xiaoaozqd
• 0
2
votes
4
replies
1.6k
views
Complex ANOVA analysis in EdgeR
edger
anova
sequencing
updated 8.9 years ago by
Aaron Lun
★ 28k • written 8.9 years ago by
kmyers2
• 0
2
votes
1
reply
3.8k
views
RNA-seq Differential expression using 3 groups
rnaseq
anova
deseq2
edger
genespring
9.5 years ago
BM
• 0
3
votes
14
replies
4.7k
views
Moderated t-test in Anova
anova
moderated t-test
updated 9.6 years ago by
Gordon Smyth
52k • written 9.6 years ago by
shaheryar
• 0
8
votes
4
replies
6.3k
views
Multiple Comparisons EdgeR
edger
multiple comparisons
anova
glm
updated 9.6 years ago by
Ryan C. Thompson
★ 7.9k • written 9.6 years ago by
chickenchamp4
▴ 20
4
votes
2
replies
9.5k
views
DESeq2 LRT output help
deseq2
LRT
anova
9.7 years ago
rclaire
▴ 20
3
votes
1
reply
1.7k
views
edgeR: glmLRT equivalence between tests with cell means model and factor levels model
edger
anova
updated 9.7 years ago by
Aaron Lun
★ 28k • written 9.7 years ago by
mmclean
• 0
2
votes
8
replies
4.1k
views
EdgeR. Analysis with pairing across condition and treatment. Design Matrix
edger
ANOVA
Design matrix
updated 10.0 years ago by
Gordon Smyth
52k • written 10.0 years ago by
chwhite
• 0
3
votes
2
replies
2.7k
views
EdgeR User Guide. Analysis with multiple factors. Section 3.3.1
edger
anova
updated 10.0 years ago by
Gordon Smyth
52k • written 10.0 years ago by
chwhite
• 0
4
votes
3
replies
11k
views
DESeq2 One-way ANOVA with 3 sample groups?
deseq2
Anova
updated 3.2 years ago by
Michael Love
43k • written 10.3 years ago by
alex.pelletier
▴ 10
32 results • Page
1 of 1
Recent ...
Replies
Comment: Problems with oarfish + tximport + swish
by
Michael Love
43k
Great thanks for posting the issue and sticking with it Annaleigh
Comment: Problems with oarfish + tximport + swish
by
brown.annaleigh
• 0
Awesome possum! Update works!! Thank you so much for the help and guidance!
Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal
by
iqratechnology4
• 0
Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/
Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
by
James W. MacDonald
67k
> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…
Comment: Problems with oarfish + tximport + swish
by
Michael Love
43k
Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …
Votes
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Answer: Limma Interaction Effect with Covariates
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