Showing : AgimicroRNA • reset
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Unable to use the function named read.agiMicroRna()
AgiMicroRna
updated 5.1 years ago by 67k • written 5.1 years ago by ▴ 10
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1.2k
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covert from RGList to uRNAList
agilent agimicrorna
updated 6.1 years ago by 52k • written 6.1 years ago by ▴ 30
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problems in reading a file in AgiMicroRna package
agimicrorna read.agimicrorna agilent microarrays
updated 7.2 years ago by ★ 1.0k • written 7.3 years ago by • 0
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Package: AgiMicroRna; Error in Loading the file
AgiMicroRna
7.3 years ago neelakandanbt • 0
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AgiMicroRna_Error in xy.coords(x, y) : 'x' and 'y' lengths differ(tgsNormalization)
AgimicroRNA
8.3 years ago cpsingh9 • 0
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Inappropriate Statistical Models for Agilent microRNA Microarray Data
agimicrorna linear model
8.8 years ago Dario Strbenac ★ 1.5k
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AgiMicroRna for new Agilent Chip format
Microarray GO limma PROcess microRNA AgiMicroRna Microarray GO limma PROcess microRNA
11.9 years ago Gordon Smyth 52k
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AgiMicroRna for new Agilent Chip format - columns gTotalGeneSignal and gTotalProbeSignal missing
GO AgiMicroRna GO AgiMicroRna
updated 11.9 years ago by ★ 1.0k • written 11.9 years ago by ★ 13k
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Agilent Chip G4858A-039494: columns gTotalGeneSignal, gTotalProbeSignal missing for AgiMicroRna
GO AgiMicroRna GO AgiMicroRna
11.9 years ago Guest User ★ 13k
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segmentation fault in rma.background.correct()
GO Preprocessing AgiMicroRna GO Preprocessing AgiMicroRna
12.4 years ago Axel Klenk ★ 1.0k
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Should AgiMicroRna and GeneSpring quantile normalisation be the same ?
Normalization GeneSpring microRNA AgiMicroRna Normalization GeneSpring microRNA AgiMicroRna
updated 12.4 years ago by ★ 1.3k • written 12.4 years ago by ▴ 30
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Access to Source Codes of Packges
limma AgiMicroRna limma AgiMicroRna
updated 12.6 years ago by 21k • written 12.6 years ago by ▴ 200
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6
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AgiMicroRna and Replicates
AgiMicroRna AgiMicroRna
updated 12.6 years ago by ★ 13k • written 12.6 years ago by ▴ 200
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Issues with AgiMicroRna filtering step (Error in is(ddNORM, "uRNAList") : object 'ddNORM' not found)
probe AgiMicroRna probe AgiMicroRna
12.9 years ago Karthik K N ▴ 200
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6
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1.8k
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Important: Help with eBayes in AgiMicrRna and on how to find differentially expressed genes
bgx AgiMicroRna bgx AgiMicroRna
updated 12.9 years ago by ▴ 60 • written 12.9 years ago by ▴ 200
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Installing AgiMicroRna Package
AgiMicroRna AgiMicroRna
updated 12.9 years ago by 25k • written 12.9 years ago by ▴ 200
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filterMicroRna function of AgiMicroRna for filtering by sample replicates
probe microRNA AgiMicroRna probe microRNA AgiMicroRna
13.4 years ago Viki S ▴ 20
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1.7k
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AgiMicroRna with single channel Agilent Array
AgiMicroRna AgiMicroRna
13.5 years ago John Lande ▴ 280
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Limma - batch issues
miRNA Microarray limma PROcess AgiMicroRna miRNA Microarray limma PROcess AgiMicroRna
13.5 years ago Segal, Corrinne ▴ 40
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ProbeNames are not matching miR names in RMA-normalized data with AgiMicroRna
miRNA Microarray Normalization AgiMicroRna miRNA Microarray Normalization AgiMicroRna
13.9 years ago Paola Ostano ▴ 10
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1.4k
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AgiMicroRna problem
Annotation microRNA AgiMicroRna Annotation microRNA AgiMicroRna
updated 13.9 years ago by ▴ 200 • written 13.9 years ago by ▴ 120
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1.7k
views
Loading data into AgiMicroRna
AgiMicroRna AgiMicroRna
updated 14.2 years ago by ▴ 460 • written 14.2 years ago by ▴ 280
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3
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1.4k
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AgiMicroRna problems
miRNA Normalization FeatureExtraction PROcess microRNA AgiMicroRna miRNA Normalization
updated 14.3 years ago by ▴ 230 • written 14.3 years ago by ▴ 910
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8
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2.1k
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AgiMicroRna problems
Normalization PROcess microRNA AgiMicroRna Normalization PROcess microRNA AgiMicroRna
14.3 years ago Mark Cowley ▴ 910
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Agi4x44PreProcess
GUI zebrafish probe AgiMicroRna GUI zebrafish probe AgiMicroRna
14.3 years ago Neel Aluru ▴ 460
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1
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1.4k
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AgiMicroRna and readMicroRnaFE
miRNA AgiMicroRna miRNA AgiMicroRna
updated 14.4 years ago by ★ 2.0k • written 14.4 years ago by ▴ 200
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4
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Model variable optimisation
Regression probe limma AgiMicroRna Regression probe limma AgiMicroRna
updated 14.5 years ago by ▴ 330 • written 14.5 years ago by ▴ 60
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AgiMicroRna and ComBat
miRNA probe AgiMicroRna miRNA probe AgiMicroRna
14.5 years ago Segal, Corrinne ▴ 40
0
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1
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971
views
AgiMicroRna package error message
Normalization microRNA AgiMicroRna Normalization microRNA AgiMicroRna
14.6 years ago Wang, Yonghong NIH/NCI ▴ 60
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1
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1.2k
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Error message with rmaMicroRna on mouse data in AgiMicroRNA
Cancer probe AgiMicroRna Cancer probe AgiMicroRna
updated 14.6 years ago by ▴ 360 • written 14.6 years ago by ★ 2.0k
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840
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mvaPlots of RMA normalized data in AgiMicroRNA
Cancer AgiMicroRna Cancer AgiMicroRna
14.6 years ago Richard Friedman ★ 2.0k
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1.6k
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AgiMicroRna - FilterMicroRna and SignificantMicroRna function
miRNA zebrafish probe AgiMicroRna miRNA zebrafish probe AgiMicroRna
14.6 years ago Neel Aluru ▴ 460
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1
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1.2k
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segfault with rmaMicroRna in AgiMicroRna package
PROcess AgiMicroRna PROcess AgiMicroRna
updated 14.7 years ago by ★ 7.4k • written 14.7 years ago by ▴ 360
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1.5k
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AgiMicroRna package is not available at bioconductor or not in active form???
Microarray Network microRNA AgiMicroRna Microarray Network microRNA AgiMicroRna
updated 14.8 years ago by ▴ 60 • written 14.8 years ago by 21k
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2.0k
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Normalisation of Agilent microRNA arrays using inbuilt controls?
GO Cancer vsn AgiMicroRna GO Cancer vsn AgiMicroRna
updated 14.9 years ago by ★ 3.6k • written 14.9 years ago by ★ 1.9k
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1.3k
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Agilent Array Analysis Question
affy limma Agi4x44PreProcess AgiMicroRna affy limma Agi4x44PreProcess AgiMicroRna
updated 15.1 years ago by ★ 1.3k • written 15.1 years ago by ▴ 350
36 results • Page 1 of 1
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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k
Sorry, I had forgotten estimateGLMDisp() produces weights as well as NB dispersions. The weights from estimatGLMRobustDisp() were intended …
Answer: Mean variance curve troubleshoot filtering by Gordon Smyth 52k
You could use `filterByExpr()`, as recommended by Law et al (2018) and in the limma and edgeR case studies. However, the main problem wi…
Comment: How do I fix an odd voom plot in a combined dataset? by Gordon Smyth 52k
The fact that you have partial NA coefficients indicates that your merged dataset consists in good part of NAs for a very large number of g…
Comment: How do I fix an odd voom plot in a combined dataset? by 1sunmic2 • 0
Thanks for responding! I did change the code slightly: dge1 <- DGEList(counts = combined_data_counts) keep <- rowSums(cpm(dge1)…
Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0
The estimateGLMRobustDisp() function seems to have an effect on glmQLFit(), even in edgeR 4 (4.4.1). If I use estimateGLMRobustDisp(), like…
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Answer: How do I fix an odd voom plot in a combined dataset?
Answer: How do I fix an odd voom plot in a combined dataset?
Comment: How do I fix an odd voom plot in a combined dataset?
C: How does edgeR cpm function calculate log(CPM) values?
C: How does edgeR cpm function calculate log(CPM) values?
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