Showing : ATACseqQC • reset
1
vote
1
reply
418
views
Error with BSgenome, wanting to analyse non-model species with ATACseqQC
ATACseqQC
updated 11 months ago by 68k • written 11 months ago by • 0
0
votes
0
replies
362
views
Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
11 months ago danalvoronov ▴ 10
0
votes
7
replies
1.3k
views
ATACseqQC shiftGAlignmentsList() problem
ATACseqQC ATACSeq
updated 11 months ago by ▴ 10 • written 14 months ago by • 0
0
votes
1
reply
811
views
Error in ATACseqQC bamQC analysis
ATACSeq ATACseqQC
updated 2.1 years ago by ★ 1.3k • written 2.1 years ago by • 0
0
votes
0
replies
813
views
[ATACseqQC] NA values in sigs makes heatmap not completed
ATACseqQC ATACSeq
2.9 years ago hyjforesight • 0
1
vote
7
replies
1.8k
views
TSSEscore function in ATACseqQC package
ATACseqQC
3.1 years ago Liu Yu-Yu • 0
0
votes
3
replies
1.4k
views
package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 2.5 years ago by ★ 5.2k • written 3.4 years ago by ▴ 40
0
votes
0
replies
592
views
ATACseqQC function fragSizeDist returns error
fragSizeDist ATACseqQC
3.5 years ago xuyao15927402897 • 0
0
votes
0
replies
671
views
NAs in TSSE for certain windows
ATACseqQC
3.5 years ago red_bricks ▴ 60
0
votes
2
replies
1.9k
views
*** caught segfault *** address 0xffffffff9a378e20, cause 'memory not mapped'
ATACseqQC
3.7 years ago Nolan • 0
0
votes
9
replies
4.7k
views
No peak corresponding to the nucleosome-free regions is observed in Fragment size distribution of ATAC-seq
ATACseqQC Fragmentsizedistribution ATAC-seq
3.8 years ago Xiaojie Cheng • 0
1
vote
4
replies
1.4k
views
How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQC
ATACseqQC
updated 4.5 years ago by ★ 4.3k • written 4.5 years ago by ▴ 10
0
votes
4
replies
2.4k
views
ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
ATACseqQC atacseq R
updated 4.5 years ago by ★ 1.3k • written 4.5 years ago by • 0
1
vote
2
replies
12k
views
Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 4.5 years ago by ★ 1.3k • written 4.5 years ago by • 0
1
vote
4
replies
1.2k
views
Subsampling when adjusting the read start sites in the ATACseqQC guide
atacseqqc r
4.6 years ago Arpi Beshlikyan • 0
0
votes
5
replies
1.8k
views
ATACSeqQC - error when splitting files using mm10
atacseqqc atac-seq R bioconductor rsamtools
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by • 0
0
votes
5
replies
2.1k
views
ATACseqQC installation fails at shiny step
ATACseqQC
updated 5.5 years ago by 68k • written 5.5 years ago by • 0
0
votes
2
replies
1.2k
views
factorFootprints, bindingSites and Profile.segmentation
ATACSeqQC factorFootprints
updated 5.6 years ago by ★ 4.3k • written 5.6 years ago by • 0
1
vote
2
replies
1.7k
views
ATACseqQC function bamSplit returns error when input .bam is from mouse
ATACseqQC
5.6 years ago beiting ▴ 30
1
vote
11
replies
2.9k
views
ATAC-QC shiftGAlignmentsList function
ATAC-seq ATACseqQC
updated 5.6 years ago by ★ 4.3k • written 5.6 years ago by • 0
0
votes
7
replies
2.0k
views
ATACseqQC splitGAlignmentsByCut: strand values must be in '+' '-' '*'
ATACseqQC R
updated 5.6 years ago by ★ 4.3k • written 5.6 years ago by • 0
0
votes
1
reply
1.2k
views
ATAC-QC fragSizeDist function
ATAC-seq ATACseqQC
updated 5.6 years ago by ★ 4.3k • written 5.6 years ago by • 0
0
votes
7
replies
2.2k
views
ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC ATAC ATACseq software error Tutorial
updated 5.7 years ago by ★ 13k • written 5.7 years ago by • 0
0
votes
6
replies
2.3k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 5.8 years ago by • 0 • written 5.8 years ago by ▴ 10
0
votes
0
replies
972
views
Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC ATAC-Seq Library complexity estimateLibComplexity
5.9 years ago Gary ▴ 20
2
votes
5
replies
1.8k
views
The meaning of results produced by the bamQC function implemented in the ATACseqQC
ATACseqQC bamQC ATAC-Seq totalQNAMEs MAPQ
updated 6.0 years ago by ★ 4.3k • written 6.0 years ago by ▴ 20
11
votes
21
replies
6.1k
views
How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC ATAC-Seq quality analysis fragment size distribution library complexity
updated 6.0 years ago by ★ 4.3k • written 6.0 years ago by ▴ 20
0
votes
3
replies
1.3k
views
Compare the DNA footprinting between different samples when using ATACseqQC
atacseqqc
updated 6.6 years ago by ★ 1.3k • written 6.6 years ago by ▴ 10
0
votes
9
replies
1.9k
views
use factorFootprints function in ATACseqQC to get DNA footprinting for certain gene region
ATACseqQC
updated 6.6 years ago by ★ 4.3k • written 6.6 years ago by ▴ 10
0
votes
1
reply
1.2k
views
ATACseqQC: a few questions
ATACseqQC
updated 6.6 years ago by ★ 4.3k • written 6.6 years ago by • 0
0
votes
1
reply
1.1k
views
ATACseqQC questions in R language
atacseqqc
updated 6.7 years ago by ★ 1.3k • written 6.7 years ago by • 0
0
votes
1
reply
1.9k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 6.9 years ago by ★ 1.3k • written 6.9 years ago by • 0
0
votes
7
replies
2.6k
views
ATACseqQC memory overflow issue
atac-seq software error atacseqqc
updated 7.0 years ago by • 0 • written 7.0 years ago by ▴ 10
0
votes
2
replies
1.3k
views
ATACseqQC needs too much memory
ATACseqQC
updated 7.2 years ago by ★ 4.3k • written 7.2 years ago by • 0
5
votes
9
replies
4.5k
views
mm10 phastCons data for use with ATACseqQC
ATACseqQC bsgenome phastcons rtracklayer
updated 7.8 years ago by ★ 1.3k • written 7.8 years ago by ▴ 10
35 results • Page 1 of 1
Recent ...
Replies
Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k
VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…
Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k
It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…
Comment: WGCNA by pammelala304 • 0
Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.
Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380
Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…
Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0
yes actually that's why I did, and its all good! thank you for your response
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
Awards • All
Popular Question to Mark Dunning ★ 1.1k
Popular Question to shepherl 4.1k
Popular Question to Hugo Varet ▴ 80
Popular Question to Fred Hutch (Recruiting) ▴ 40
Popular Question to Wolfgang Huber ★ 13k
Locations • All
United States, just now
Türkiye, 8 minutes ago
UPF, Barcelona, Spain, 12 minutes ago
France, 14 minutes ago
India, 59 minutes ago
Traffic: 998 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6