Showing : ATACSeqQC • reset
1
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406
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Error with BSgenome, wanting to analyse non-model species with ATACseqQC
ATACseqQC
updated 11 months ago by 67k • written 11 months ago by • 0
0
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0
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353
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Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
11 months ago danalvoronov ▴ 10
0
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7
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1.3k
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ATACseqQC shiftGAlignmentsList() problem
ATACseqQC ATACSeq
updated 11 months ago by ▴ 10 • written 14 months ago by • 0
0
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1
reply
798
views
Error in ATACseqQC bamQC analysis
ATACSeq ATACseqQC
updated 2.1 years ago by ★ 1.3k • written 2.1 years ago by • 0
0
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0
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801
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[ATACseqQC] NA values in sigs makes heatmap not completed
ATACseqQC ATACSeq
2.9 years ago hyjforesight • 0
1
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7
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1.7k
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TSSEscore function in ATACseqQC package
ATACseqQC
3.0 years ago Liu Yu-Yu • 0
0
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3
replies
1.4k
views
package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 2.4 years ago by ★ 5.2k • written 3.3 years ago by ▴ 40
0
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0
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583
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ATACseqQC function fragSizeDist returns error
fragSizeDist ATACseqQC
3.4 years ago xuyao15927402897 • 0
0
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0
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661
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NAs in TSSE for certain windows
ATACseqQC
3.4 years ago red_bricks ▴ 60
0
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2
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1.8k
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*** caught segfault *** address 0xffffffff9a378e20, cause 'memory not mapped'
ATACseqQC
3.6 years ago Nolan • 0
0
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9
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4.6k
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No peak corresponding to the nucleosome-free regions is observed in Fragment size distribution of ATAC-seq
ATACseqQC Fragmentsizedistribution ATAC-seq
3.8 years ago • updated 3.7 years ago Xiaojie Cheng • 0
1
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4
replies
1.4k
views
How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQC
ATACseqQC
updated 4.4 years ago by ★ 4.3k • written 4.4 years ago by ▴ 10
0
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4
replies
2.4k
views
ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
ATACseqQC atacseq R
updated 4.4 years ago by ★ 1.3k • written 4.5 years ago by • 0
1
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2
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12k
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Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 4.5 years ago by ★ 1.3k • written 4.5 years ago by • 0
1
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4
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1.2k
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Subsampling when adjusting the read start sites in the ATACseqQC guide
atacseqqc r
4.5 years ago Arpi Beshlikyan • 0
0
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5
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1.8k
views
ATACSeqQC - error when splitting files using mm10
atacseqqc atac-seq R bioconductor rsamtools
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by • 0
0
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5
replies
2.0k
views
ATACseqQC installation fails at shiny step
ATACseqQC
updated 5.4 years ago by 67k • written 5.4 years ago by • 0
0
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2
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1.2k
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factorFootprints, bindingSites and Profile.segmentation
ATACSeqQC factorFootprints
updated 5.5 years ago by ★ 4.3k • written 5.5 years ago by • 0
1
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2
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1.7k
views
ATACseqQC function bamSplit returns error when input .bam is from mouse
ATACseqQC
5.5 years ago beiting ▴ 30
1
vote
11
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2.9k
views
ATAC-QC shiftGAlignmentsList function
ATAC-seq ATACseqQC
updated 5.6 years ago by ★ 4.3k • written 5.6 years ago by • 0
0
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7
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1.9k
views
ATACseqQC splitGAlignmentsByCut: strand values must be in '+' '-' '*'
ATACseqQC R
updated 5.6 years ago by ★ 4.3k • written 5.6 years ago by • 0
0
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1
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1.2k
views
ATAC-QC fragSizeDist function
ATAC-seq ATACseqQC
updated 5.6 years ago by ★ 4.3k • written 5.6 years ago by • 0
0
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7
replies
2.1k
views
ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC ATAC ATACseq software error Tutorial
updated 5.6 years ago by ★ 13k • written 5.6 years ago by • 0
0
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6
replies
2.3k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 5.7 years ago by • 0 • written 5.8 years ago by ▴ 10
0
votes
0
replies
950
views
Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC ATAC-Seq Library complexity estimateLibComplexity
5.9 years ago Gary ▴ 20
2
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5
replies
1.8k
views
The meaning of results produced by the bamQC function implemented in the ATACseqQC
ATACseqQC bamQC ATAC-Seq totalQNAMEs MAPQ
updated 5.9 years ago by ★ 4.3k • written 6.0 years ago by ▴ 20
11
votes
21
replies
6.0k
views
How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC ATAC-Seq quality analysis fragment size distribution library complexity
updated 6.0 years ago by ★ 4.3k • written 6.0 years ago by ▴ 20
0
votes
3
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1.2k
views
Compare the DNA footprinting between different samples when using ATACseqQC
atacseqqc
updated 6.5 years ago by ★ 1.3k • written 6.5 years ago by ▴ 10
0
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9
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1.9k
views
use factorFootprints function in ATACseqQC to get DNA footprinting for certain gene region
ATACseqQC
updated 6.6 years ago by ★ 4.3k • written 6.6 years ago by ▴ 10
0
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1
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1.2k
views
ATACseqQC: a few questions
ATACseqQC
updated 6.6 years ago by ★ 4.3k • written 6.6 years ago by • 0
0
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1
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1.1k
views
ATACseqQC questions in R language
atacseqqc
updated 6.7 years ago by ★ 1.3k • written 6.7 years ago by • 0
0
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1
reply
1.9k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 6.9 years ago by ★ 1.3k • written 6.9 years ago by • 0
0
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7
replies
2.6k
views
ATACseqQC memory overflow issue
atac-seq software error atacseqqc
updated 7.0 years ago by • 0 • written 7.0 years ago by ▴ 10
0
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2
replies
1.3k
views
ATACseqQC needs too much memory
ATACseqQC
updated 7.2 years ago by ★ 4.3k • written 7.2 years ago by • 0
5
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9
replies
4.5k
views
mm10 phastCons data for use with ATACseqQC
ATACseqQC bsgenome phastcons rtracklayer
updated 7.7 years ago by ★ 1.3k • written 7.7 years ago by ▴ 10
35 results • Page 1 of 1
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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA by User3088 • 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function by iamin053 • 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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