Showing : 450k • reset
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569
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cpgCollapse error
450K blockfinder cpgCollapse minfi
20 months ago edward.esiribloom • 0
3
votes
6
replies
2.1k
views
Minfi can't combineArrays
RGset combinearrays 450k minfi
updated 3.3 years ago by 67k • written 3.3 years ago by • 0
0
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0
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876
views
Error when trying to read in idat files in methylumi
methylumi 450k methylation methylome
4.9 years ago A ▴ 40
6
votes
3
replies
11k
views
Minfi issue: return code from pthread_create() is 22
minfi 450k
updated 20 months ago by • 0 • written 5.4 years ago by ▴ 10
0
votes
1
reply
2.2k
views
How to analyse 450k and EPIC methylation data together?
minfi 450k EPIC analysis
updated 5.2 years ago by 67k • written 5.2 years ago by • 0
0
votes
3
replies
1.4k
views
Limma for cell components effect on response
450k EPIC minfi limma cell components
updated 5.4 years ago by ★ 28k • written 5.4 years ago by • 0
1
vote
6
replies
2.4k
views
Reading 450k data in minfi
450K minfi
updated 5.7 years ago by • 0 • written 5.8 years ago by • 0
0
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3
replies
1.6k
views
QC and normalization of 450K data from CSVs instead of IDATs
450K CSV normalization minfi ChAMP
updated 6.5 years ago by ▴ 290 • written 6.5 years ago by ▴ 190
0
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0
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1.2k
views
how to analyze "Beta-score" and get CNVdata using Comunee
conumee CNV 450K
6.8 years ago bird.of.clockwise • 0
0
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0
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1.4k
views
Error when using Champ.SVD() function
champ champs.svd() 450K illimina 450k methylation champ 2.8.9
7.2 years ago david.ch • 0
0
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0
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1.5k
views
minfi estimateCellCounts normalized beta values adjusted for cell type
minfi 450k
7.5 years ago igor ▴ 50
6
votes
2
replies
4.7k
views
Plotting Differentially Methylated Regions
minfi bumphunter 450k region
updated 7.9 years ago by ▴ 80 • written 8.7 years ago by ▴ 40
0
votes
2
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2.3k
views
Error using Bumphunter and Block finder using CHAMP
champ methylation 450k
8.0 years ago hrishi27n ▴ 20
0
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0
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1.3k
views
Error in assay colnames when using readGEORawFile function in "minfi" package
minfi methylation 450k
8.0 years ago moonkinwen • 0
2
votes
1
reply
1.8k
views
Minfi: estimateCellCounts rgSet
minfi 450k flowsorted.blood.450k
updated 8.0 years ago by ▴ 200 • written 8.6 years ago by ▴ 40
0
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0
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1.6k
views
News: ChAMP2 is online
epigenetics EPIC 450K ChAMP News
8.1 years ago Yuan Tian ▴ 90
0
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1
reply
2.2k
views
News: Bug in ChAMP package champ.SVD() function
champ methylation 450k SVD EPIC News
8.2 years ago Yuan Tian ▴ 90
3
votes
3
replies
3.5k
views
Adjustment of covariates in 450k data using Limma
limma covariates 450k
8.6 years ago AST ▴ 60
4
votes
4
replies
3.4k
views
How to remove unwanted probes before normalization in 450k data
minfi 450k champ rnbeads
updated 8.7 years ago by 67k • written 8.7 years ago by ▴ 60
4
votes
10
replies
4.9k
views
Illumina MethylationEPIC vs. 450K
methylumi minfi illuminahumanmethylation450k.db 450k methyanalysis
updated 8.7 years ago by ▴ 740 • written 8.7 years ago by ▴ 50
0
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0
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1.6k
views
How can I do paired test on my Illumina 450k idat files with ChAMP package?
Illumina 450k ChAMP paired test
8.8 years ago walter_teng • 0
3
votes
1
reply
1.4k
views
two 450K methylation array manifests. where is the difference?
methylation 450k
8.8 years ago Pablo marin-garcia ▴ 90
0
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0
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1.5k
views
Repetitive motifs on Illumina 450k derived sequences
illumina 450k motifs meme
8.8 years ago Gustavo Fernández Bayón ▴ 440
0
votes
6
replies
6.6k
views
ComBat with multiple batches
sva combat 450k
8.9 years ago ben.run974 • 0
0
votes
4
replies
2.7k
views
preprocessFunnorm in minfi
minfi 450k illuminahumanmethylation450k.db normalization
updated 8.9 years ago by 67k • written 8.9 years ago by • 0
1
vote
7
replies
3.9k
views
Loading beta values into minfi
minfi 450k
updated 9.1 years ago by ★ 6.5k • written 9.1 years ago by ▴ 10
0
votes
2
replies
2.0k
views
Loading RData files into ChAMP
microarray champ 450k
updated 9.1 years ago by • 0 • written 9.1 years ago by ▴ 10
0
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0
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1.5k
views
minfi v1.14 through champ: read.450k error with file path name
minfi champ illumina 450k
9.2 years ago jeroen • 0
1
vote
2
replies
2.0k
views
QC/normalization standards for cancer studies with 450k array data
minfi watermelon cancer 450k normalization
updated 9.4 years ago by ★ 6.5k • written 9.4 years ago by ▴ 10
6
votes
3
replies
3.4k
views
Limma on Methylation Data - Fold Change Question
limma 450k
updated 9.4 years ago by ★ 28k • written 9.4 years ago by ▴ 370
0
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4
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1.9k
views
Use of confounders in downstream analysis
limma GSA confounding within-pair analysis 450k
9.6 years ago Aileen Bahl ▴ 10
0
votes
1
reply
4.5k
views
methyAnalysis M values and Beta Values
methyAnalysis methyanalysis 450k
updated 9.7 years ago by ▴ 80 • written 9.7 years ago by ▴ 370
1
vote
2
replies
2.5k
views
Bias correction for enrichment analysis of 450k methylation data => feed bias adjusted genes into IPA
goseq 450k enrichment
updated 9.7 years ago by ▴ 40 • written 9.7 years ago by ▴ 10
33 results • Page 1 of 1
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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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Answer: Differene between the Wald and LRT test for time-series gene expression data
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
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