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Comment: contrast matrix design for a continuous variable
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dtzhu337
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Hi Gordon,
Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…
Answer: SingleCellExperiment convenience function for metadata+expression?
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Peter Hickey
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Hi Sarah,
`scuttle::makePerCellDF()` / `scuttle::makePerFeatureDF()` and `scater::ggcells()` / `scater::ggfeatures()`, which build upon th…
Comment: How to sort negative log2FC or FC in RNAseq for GSEA?
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QN
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Thank you ATpoint for your response!
In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…
Answer: How to sort negative log2FC or FC in RNAseq for GSEA?
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ATpoint
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4.6k
GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…
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