Showing : 16srRNA • reset
0
votes
1
reply
601
views
Can I use baseMean (from DESeq2) as part of presenting/ interpreting results
DESeq2 diferentialabundance 16srRNA baseMean
updated 19 months ago by 42k • written 19 months ago by • 0
2
votes
1
reply
2.2k
views
Deseq2 for 16s Data
Microbiome 16s Deseq2 16srRNA
updated 2.6 years ago by 42k • written 2.6 years ago by ▴ 10
2 results • Page 1 of 1
Recent ...
Replies
Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0
Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…
Comment: Problem at champ.load by andrew.gibbons • 0
I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…
Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0
Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…
Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k
> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
Awards • All
Teacher to Gordon Smyth 51k
Popular Question to Guido Hooiveld ★ 4.1k
Popular Question to shepherl 4.1k
Supporter to Paul Harrison ▴ 100
Popular Question to Mikhail Dozmorov ▴ 30
Locations • All
Canada, 1 minute ago
United States, 31 minutes ago
United States, 33 minutes ago
UPF, Barcelona, Spain, 37 minutes ago
United States, 40 minutes ago
Traffic: 601 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6