Bioconductor 10x

Showing : 10x • reset

votes

replies

319

views

CellRanger emptyDrops scRNAseq 10X

3 months ago rocanja ▴ 60

votes

743

views

SingleCell emptyDrops 10X

updated 14 months ago by Peter Hickey ▴ 740 • written 14 months ago by sandra.garces.19 • 0

votes

replies

687

views

RNAseq 10X

15 months ago wt215 • 0

votes

replies

2.6k

views

DropletUtils emptyDrops scRNA scRNAseq 10x

23 months ago • updated 22 months ago Peter Hickey ▴ 740

vote

1.1k

views

DropletUtils emptyDrops 10x

updated 3.4 years ago by Aaron Lun ★ 28k • written 3.4 years ago by Peter Hickey ▴ 740

votes

replies

1.4k

views

deseq2 zinbwave 10X scRNA-seq Differential expression

updated 4.0 years ago by Michael Love 42k • written 4.0 years ago by vincent.croset ▴ 20

votes

replies

2.5k

views

10x scrna-seq

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by jma1991 ▴ 70

votes

replies

7.2k

views

single-cell 10X Cell calling DropletUtils cellranger

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by xingxd16 ▴ 20

8 results • Page 1 of 1

Recent ...

Replies

Comment: Ranking the GSEA Results by Lluís Revilla Sancho ▴ 730

You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…

Answer: Create a Graph w/ Only the Genes Interaction by Antonio • 0

Thank you all, I solved my issue by creating a for loop. Cheers!

Comment: Ranking the GSEA Results by alserg ▴ 270

Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself

Comment: Ranking the GSEA Results by alserg ▴ 270

Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…

Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k

As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…

Votes

Comment: Ranking the GSEA Results

Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)

ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features

Comment: How to get the DMR?

Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it

Awards • All

Popular Question to mohammedtoufiq91 ▴ 10