Bioconductor 10x

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670

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CellRanger emptyDrops scRNAseq 10X

10 months ago rocanja ▴ 60

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1.0k

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SingleCell emptyDrops 10X

updated 20 months ago by Peter Hickey ▴ 750 • written 20 months ago by sandra.garces.19 • 0

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943

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RNAseq 10X

22 months ago wt215 • 0

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3.3k

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DropletUtils emptyDrops scRNA scRNAseq 10x

2.5 years ago • updated 2.4 years ago Peter Hickey ▴ 750

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1.3k

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DropletUtils emptyDrops 10x

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by Peter Hickey ▴ 750

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1.7k

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 4.5 years ago by Michael Love 43k • written 4.5 years ago by vincent.croset ▴ 20

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3.0k

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10x scrna-seq

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by jma1991 ▴ 70

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8.0k

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single-cell 10X Cell calling DropletUtils cellranger

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by xingxd16 ▴ 20

8 results • Page 1 of 1

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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by alserg ▴ 280

`NES > 0` means that your gene set has more genes with positive logFC/stat. In your case these genes should be up in Subset1. However, if y…

Answer: affymetrix by James W. MacDonald 67k

When posting it helps to think about the people you are asking for help. Your post is hidden within the dummy text that comes up when you i…

Answer: Problems with GSEA by Guido Hooiveld ★ 4.1k

The error `Duplicate values in names(stats) not allowed` (from `fgsea` that is used under the hood) shows that the input is not unique; in …

Answer: Error compiling Rbowtie2 in R-4.4 (Bioconductor 3.20 and probably 3.19) by ja.garcia • 0

It has been fixed by the Rbowtie2 maintainers in version 2.12.2. Thank you for the quick fix!

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…

Votes

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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