Bioconductor 10x

Showing : 10x • reset

votes

replies

593

views

CellRanger emptyDrops scRNAseq 10X

8 months ago rocanja ▴ 60

votes

952

views

SingleCell emptyDrops 10X

updated 19 months ago by Peter Hickey ▴ 740 • written 19 months ago by sandra.garces.19 • 0

votes

replies

908

views

RNAseq 10X

20 months ago wt215 • 0

votes

replies

3.2k

views

DropletUtils emptyDrops scRNA scRNAseq 10x

2.3 years ago Peter Hickey ▴ 740

vote

1.2k

views

DropletUtils emptyDrops 10x

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by Peter Hickey ▴ 740

votes

replies

1.6k

views

deseq2 zinbwave 10X scRNA-seq Differential expression

updated 4.4 years ago by Michael Love 43k • written 4.4 years ago by vincent.croset ▴ 20

votes

replies

2.9k

views

10x scrna-seq

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by jma1991 ▴ 70

votes

replies

7.9k

views

single-cell 10X Cell calling DropletUtils cellranger

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by xingxd16 ▴ 20

8 results • Page 1 of 1

Recent ...

Replies

Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k

You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…

Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k

Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

That's odd. So it can run successfully within markdown but would be failed when knitting?

Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

> dim(spe) [1] 19962 425

Votes

Answer: contrast matrix design for a continuous variable

A: What's the difference between p.adjust and qvalue?

Answer: DESeq2- merging technical vs biological replicates

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Awards • All

Popular Question to Ou, Jianhong ★ 1.3k