Bioconductor 10X

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689

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CellRanger emptyDrops scRNAseq 10X

10 months ago rocanja ▴ 60

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1.0k

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SingleCell emptyDrops 10X

updated 21 months ago by Peter Hickey ▴ 750 • written 21 months ago by sandra.garces.19 • 0

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949

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RNAseq 10X

22 months ago wt215 • 0

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3.4k

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DropletUtils emptyDrops scRNA scRNAseq 10x

2.5 years ago Peter Hickey ▴ 750

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1.3k

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DropletUtils emptyDrops 10x

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by Peter Hickey ▴ 750

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1.7k

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 4.5 years ago by Michael Love 43k • written 4.5 years ago by vincent.croset ▴ 20

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3.1k

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10x scrna-seq

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by jma1991 ▴ 70

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8.1k

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single-cell 10X Cell calling DropletUtils cellranger

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by xingxd16 ▴ 20

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Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Comment: build samplesheet and plot profile by yf • 0

![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Votes

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

A: Doubt about the "zero expression" genes or genes with no reads at all in the co

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

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