Bioconductor 10X

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CellRanger emptyDrops scRNAseq 10X

11 months ago rocanja ▴ 60

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1.1k

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SingleCell emptyDrops 10X

updated 22 months ago by Peter Hickey ▴ 750 • written 22 months ago by sandra.garces.19 • 0

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RNAseq 10X

23 months ago wt215 • 0

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DropletUtils emptyDrops scRNA scRNAseq 10x

2.6 years ago • updated 2.5 years ago Peter Hickey ▴ 750

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1.3k

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DropletUtils emptyDrops 10x

updated 4.1 years ago by Aaron Lun ★ 28k • written 4.1 years ago by Peter Hickey ▴ 750

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1.8k

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 4.6 years ago by Michael Love 43k • written 4.6 years ago by vincent.croset ▴ 20

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10x scrna-seq

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by jma1991 ▴ 70

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8.3k

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single-cell 10X Cell calling DropletUtils cellranger

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by xingxd16 ▴ 20

8 results • Page 1 of 1

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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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