Bioconductor [findOverlaps]

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[findOverlaps] [GAlignments]

updated 9.9 years ago by Valerie Obenchain ★ 6.8k • written 9.9 years ago by Arun ▴ 20

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Comment: DESeq2: thousands of NA for pvalues? by fuqichen1 • 0

Hi, do these genes need to be removed from GSEA analysis?

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Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…

Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k

Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…

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A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

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