Recent ...
Replies
Comment: What type of counts data to import for performing Isoform analysis in edgeR
by
ATpoint
★
4.5k
Probably nf-core did not run with bootstrap/gibbs replicates. Check the code. See salmon docs on how to turn that on.
Comment: What type of counts data to import for performing Isoform analysis in edgeR
by
mohammedtoufiq91
▴
10
@atpoint Thank you. I did wanted to try using the `quant.sf` files from the `salmon` run by referring edgeR user guide example `4.6 Differe…
Comment: athPkgBuilder data source :missing probesets
by
bobihanigujjar
•
0
In this article, we'll explore the demand for unbranded BJJ Gis and the benefits of choosing unbranded Gis for customization. [does anyone …
Comment: Crossover design with limma
by
SamGG
▴
360
IMHO, here are the missing annotations
treatmentdrug_orderDrugPlac - treatmentplacebo_orderDrugPlac, # effect of drug for the Drug…
Answer: What type of counts data to import for performing Isoform analysis in edgeR
by
ATpoint
★
4.5k
You don't need any of these files. You need the `catchSalmon` function which reads `quant.sf` and the inferential (Bootstrap/Gibbs) replica…
Awards
• All
Popular Question to
Marek Gierlinski
▴
30
Scholar to
Gordon Smyth
52k
Popular Question to
mohammedtoufiq91
▴
10
Popular Question to
Hans-Ulrich Klein
▴
330
Popular Question to
phelankj
•
0
Locations
• All
France, 1 minute ago
United Kingdom, 56 minutes ago
United States, 1 hour ago
United Kingdom, 4 hours ago
United States, 4 hours ago
France, 1 minute ago
United Kingdom, 56 minutes ago
United States, 1 hour ago
United Kingdom, 4 hours ago
United States, 4 hours ago
Traffic: 575 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6