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Comment: Discrepancy between Excel TPP-TR reported values and the Melt Curve reported val
by
James W. MacDonald
68k
You will need to provide a self-contained example, or it is unlikely that anybody could debug any possible issue.
Answer: Limma - Complex 2-way multi-level contrast with paired samples
by
James W. MacDonald
68k
If you are fitting donor as a fixed effect you do not also need to fit as a random effect. The limma package fits a generalized least squar…
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
ATpoint
★
4.7k
Yes, perfectly valid. Analyzing counts from high-throughput experiments with DESeq2 (or edgeR, or limma) is standard. After all, what DiffB…
Comment: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
by
AB
▴
110
Force=TRUE did the trick. Thank you.
Comment: www.stats.ox.ac.uk seems to be off, leading to errors/delays when installing pac
by
DENG
•
0
[https://github.com/djunsheep/CRANextra/blob/main/README.md][1]
add the following to the `.Rprofile` and `Rprofile.site`
# fixing the…
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