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Comment: How can I correctly use phyloseq with Docker?
by
James W. MacDonald
68k
You can use [bioc-run][1] to simplify things as well.
[1]: https://github.com/Bioconductor/bioc-run/tree/devel
Comment: How can I correctly use phyloseq with Docker?
by
James W. MacDonald
68k
You show how you modified the container, but not how you are running it, which is the critical part.
Comment: Discrepancies in normalised count data vs unnormalised
by
AMgroup
•
0
Thank you for your reply.
> Per sample all counts are scaled by the same size factor so I strongly assume that something was parsed here …
Comment: Discrepancies in normalised count data vs unnormalised
by
ATpoint
★
4.8k
Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…
Comment: Cannot extract size factor from DESeq2 analysis
by
s.malik
•
0
Dear Mike,
using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL?
`dds <- DESeq…
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