Dear all,

please could you let me know on the following : as the function Oncoplot() in the package "maftools" is based on the Oncoprint() function in ComplexHeatmap, does it imply that any options from Oncoprint() we can use for Oncoplot() ?

thank you,

-- bogdan

Hi Bogdan,

maftools uses complexheatmaps oncoprint source code but with little modifications to automate the plotting. However you can run oncoplot function with `writeMatrix = TRUE` which will write the underlying matrix to an output file. This file can be directly used as an input to complexheatmaps `conoprint` function. See ?oncoplot for details. Hope this helps.

-Anand.