Dear developer team,

many thanks for the great tool cn.MOPS which I am running in R. It is very helpful for our analysis.  

May I ask you whether it is possible to report also the log normalized read counts (used for the seqplot function) as .csv table similar to the functions:

> segm <- as.data.frame(segmentation(result))

> CNVs <- as.data.frame(cnvs(result))

> CNVRegions <- as.data.frame(cnvr(result))

Many thanks for your help and

Best regards

There is a hidden function called ".makeLogRatios" that you can apply to the cn.mops result object:

library(cn.mops)
data(cn.mops)
res <- cn.mops(XRanges)
logRatios <- cn.mops:::.makeLogRatios(res)
as.data.frame(logRatios)

Regards,

Günter