Question

ChiPQC run time error

0

Entering edit mode

NANADAWONG • 0

@nanadawong-13537

Last seen 7.4 years ago

Installed ChIPQC r package and I run ChiPQCsample encountered the following error

ChIPQCsample(testSample,peaks=NULL,annotation=NULL)
Bam file has 25 contigs
Error in validObject(.Object) :
invalid class “PhredQuality” object: undefined class for slot "elementMetadata" ("DataTableORNULL")

Please help! Thanks!

ChiPQC • 1.5k views

ADD COMMENT • link updated 7.4 years ago by Thomas Carroll ▴ 420 • written 7.4 years ago by NANADAWONG • 0

score 0 · Answer 1 · 2017-07-19

0

Entering edit mode

Thomas Carroll ▴ 420

@thomas-carroll-7019

Last seen 2.1 years ago

United States/New York/The Rockefeller …

hi,

Could you provide the session information by running sessionInfo() function?

> sessionInfo()

best,

tom

ADD COMMENT • link 7.4 years ago Thomas Carroll ▴ 420

0

Entering edit mode

Hi,

Any success on this..??

ADD REPLY • link 6.8 years ago geekyvt • 0

0

Entering edit mode

I don't think there is anything to do. No session information or any details on file inputs.

ADD REPLY • link 6.8 years ago Thomas Carroll ▴ 420