using BiocLite() on Ubuntu Xenial with its default R 3.2.3 release
0
0
Entering edit mode
@howarthmailinglists-13534
Last seen 5.2 years ago

I am trying to use the BiocLite() feature of Bioconductor to install the R modules required by MetaboAnalyst 3.0 under Ubuntu Xenial 16.04LTS with its system R 3.2.3 release. I have added the repo for Micheal Rutter's cran2deb4ubuntu to provide the missing cran R modules but have avoided installing any of the r-bioc ones to keep the installation purely using those installed in /usr/local/lib/R by BiocLite(). Unfortunately, this is failing on 

$ sudo R

> source("https://bioconductor.org/biocLite.R")

> biocLite("‘AnnotationDbi")

BioC_mirror: https://bioconductor.org
Using Bioconductor 3.2 (BiocInstaller 1.20.3), R 3.2.3 (2015-12-10).
Installing package(s) ‘‘AnnotationDbi’
Warning message:
package ‘‘AnnotationDbi’ is not available (for R version 3.2.3) 

Certainly there must be a way to redirect BiocLite to a legacy release which fully supports the older R 3.2.3 in the current Ubuntu LTS release? 

 

 

bioclite • 969 views
ADD COMMENT

Login before adding your answer.

Traffic: 645 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6