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Hello,
I am doing RNA-Seq analysis and found more than 500 significantly differentially expressed genes. Next, I have finished the gene ontology analysis by using the GOStats package in R. But in the output file, I couldn't see whether any "GO-terms" enriched or depleted. I have tried to find in the "GOstats" package but failed to do so.
I need your help regarding this issue.
Thanks,
Which kind of file do you have? What where the commands used and the output?