Trying to read in a gating template causes error
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justinyi10 ▴ 10
@justinyi10-13384
Last seen 7.4 years ago

I am trying to read in a gating template I created (.csv) using the following commands, however I am hit with an error.

gtFile<-system.file("/Users/justinyi/Desktop/gating_template.csv",package="openCyto")

gt_tcell<-gatingTemplate(gtFile, verbose = TRUE)
Input contains a \n (or is ""). Taking this to be text input (not a filename)
Input ends before any \r or \n observed. Input will be treated as a single data row.
Positioned on line 1 after skip or autostart
This line is blank. Moving to the next non-blank ... 
Error in fread(x, ...) : 
  Input is either empty or fully whitespace after the skip or autostart. Run again with verbose=TRUE.

How do I resolve this?

opencyto gating bioconductor • 884 views
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I hit the same snag. Any solution?

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