Dear bioconductor team,
When I try to run the msPurity package on R (which is using the XCMS package) I run in the following warning message:
Warning message: In fun(libname, pkgname) : mzR has been built against a different Rcpp version (0.12.8) than is installed on your system (0.12.11). This might lead to errors when loading mzR. If you encounter such issues, please send a report, including the output of sessionInfo() to the Bioc support forum at https://support.bioconductor.org/. For details see also https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue.
I already tried to solve them according to the instructions on "
https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue" but it did not help.
Here is also the sessionInfo which was mentioned in the warning message (hope I understood that right):
> sessionInfo("msPurity") R version 3.3.1 (2016-06-21) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build 7601) Service Pack 1 locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: character(0) other attached packages: [1] msPurity_1.0.0 loaded via a namespace (and not attached): [1] Rcpp_0.12.11 lattice_0.20-33 codetools_0.2-14 grDevices_3.3.1 [5] snow_0.4-2 foreach_1.4.3 grid_3.3.1 plyr_1.8.4 [9] magrittr_1.5 datasets_3.3.1 BiocInstaller_1.24.0 stringi_1.1.5 [13] utils_3.3.1 reshape2_1.4.2 fastcluster_1.1.22 graphics_3.3.1 [17] mzR_2.8.1 base_3.3.1 BiocParallel_1.8.2 RColorBrewer_1.1-2 [21] iterators_1.0.8 tools_3.3.1 stringr_1.2.0 Biobase_2.34.0 [25] ProtGenerics_1.6.0 parallel_3.3.1 BiocGenerics_0.20.0 stats_3.3.1 [29] doSNOW_1.0.14 methods_3.3.1 > sessionInfo("Rcpp") R version 3.3.1 (2016-06-21) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build 7601) Service Pack 1 locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: character(0) other attached packages: [1] Rcpp_0.12.11 loaded via a namespace (and not attached): [1] lattice_0.20-33 codetools_0.2-14 grDevices_3.3.1 snow_0.4-2 [5] foreach_1.4.3 msPurity_1.0.0 grid_3.3.1 plyr_1.8.4 [9] magrittr_1.5 datasets_3.3.1 BiocInstaller_1.24.0 stringi_1.1.5 [13] utils_3.3.1 reshape2_1.4.2 fastcluster_1.1.22 graphics_3.3.1 [17] mzR_2.8.1 base_3.3.1 BiocParallel_1.8.2 RColorBrewer_1.1-2 [21] iterators_1.0.8 tools_3.3.1 stringr_1.2.0 Biobase_2.34.0 [25] ProtGenerics_1.6.0 parallel_3.3.1 BiocGenerics_0.20.0 stats_3.3.1 [29] doSNOW_1.0.14 methods_3.3.1 > sessionInfo("mzR") R version 3.3.1 (2016-06-21) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build 7601) Service Pack 1 locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: character(0) other attached packages: [1] mzR_2.8.1 loaded via a namespace (and not attached): [1] Rcpp_0.12.11 lattice_0.20-33 codetools_0.2-14 grDevices_3.3.1 [5] snow_0.4-2 foreach_1.4.3 msPurity_1.0.0 grid_3.3.1 [9] plyr_1.8.4 magrittr_1.5 datasets_3.3.1 BiocInstaller_1.24.0 [13] stringi_1.1.5 utils_3.3.1 reshape2_1.4.2 fastcluster_1.1.22 [17] graphics_3.3.1 base_3.3.1 BiocParallel_1.8.2 RColorBrewer_1.1-2 [21] iterators_1.0.8 tools_3.3.1 stringr_1.2.0 Biobase_2.34.0 [25] ProtGenerics_1.6.0 parallel_3.3.1 BiocGenerics_0.20.0 stats_3.3.1 [29] doSNOW_1.0.14 methods_3.3.1
Do you know if there is a way to solve this problem or do I have to give you more information on it first? Anyway many thanks for your help in advance!
Greetings
Yasin
Note also that you are using a somewhat old version of R (current version is 3.4.1) and, as a result, the old release of Bioconductor. You won't be able to get the latest mzR (that is using the latest Rcpp) without a more recent R.