How to extract a numeric matrix of the raw measurement values from the FCS file?
2
0
Entering edit mode
eva.bjela • 0
@evabjela-13377
Last seen 7.5 years ago

Hi, 

I need to get the raw data (raw measurement values) for single parameter from my 11 parameters FCS file. 
How can I do this? 

Thank you.
Eva
 

bioconductor • 814 views
ADD COMMENT
0
Entering edit mode
@wolfgang-huber-3550
Last seen 3 months ago
EMBL European Molecular Biology Laborat…

Did you already see the function read.FCS in the flowCore package?

ADD COMMENT
0
Entering edit mode
eva.bjela • 0
@evabjela-13377
Last seen 7.5 years ago

Yes, I can read the file. 
I just needed to convert it to the data frame, but I had to do something wrong, because it did not work. (I have no idea what was wrong.)
I started R again and here it is. 

S1 <- read.FCS ("Desktop/R/06_1.fcs", transformation = "scale")
S1.df <- exprs(S1)

Thanks. 

ADD COMMENT

Login before adding your answer.

Traffic: 654 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6