How to extract a numeric matrix of the raw measurement values from the FCS file?
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eva.bjela • 0
@evabjela-13377
Last seen 7.5 years ago

Hi, 

I need to get the raw data (raw measurement values) for single parameter from my 11 parameters FCS file. 
How can I do this? 

Thank you.
Eva
 

bioconductor • 811 views
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@wolfgang-huber-3550
Last seen 3 months ago
EMBL European Molecular Biology Laborat…

Did you already see the function read.FCS in the flowCore package?

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eva.bjela • 0
@evabjela-13377
Last seen 7.5 years ago

Yes, I can read the file. 
I just needed to convert it to the data frame, but I had to do something wrong, because it did not work. (I have no idea what was wrong.)
I started R again and here it is. 

S1 <- read.FCS ("Desktop/R/06_1.fcs", transformation = "scale")
S1.df <- exprs(S1)

Thanks. 

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