ChIPQC : ChIPQCreport(dba_object) getting error when drawing plotFribl

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ZheFrench ▴ 60

@zhefrench-11689

Last seen 3 months ago

France

What is going on here ?


ChIPQCreport(dba_chip_init,facet=T,lineBy=c("Replicate"),facetBy=c("Condition","Factor"),reportName=paste0(filename,"Marks",collapse = "_"), reportFolder=dir_output,colourBy=c("Replicate"))

Saving 7 x 7 in image
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Error in data.frame(Sample = names(riblWithBLs), Inside = riblWithBLs,  :
  row names contain missing values
Calls: ChIPQCreport ... ggsave -> grid.draw -> plotFribl -> plotFribl -> data.frame

ChIPQC • 1.4k views

ADD COMMENT • link 7.5 years ago ZheFrench ▴ 60

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hi,

If you can provide a link to an RData file of your dba_chip_init object Icould take a look.

best,

tom

ADD REPLY • link 7.5 years ago Thomas Carroll ▴ 420

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I found by myself, sorry to bother with this one, it was caused by a mistake in name of sample control inside my samplefiles.csv. Careless error :/ Sorry

Thanks!

ADD REPLY • link 7.5 years ago ZheFrench ▴ 60

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Hi,

It's unlikely that people are going to be able to help you if they can't reproduce the problem. Please read our posting guide for how to properly ask a question or report a bug. Thanks!

H.

ADD REPLY • link 7.5 years ago Hervé Pagès 16k

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