In R, I loaded affy library, and then I typed in > Data <- ReadAffy(widget=TRUE) I got the following: Loading required package: tkWidgets Loading required package: widgetTools Attaching package `tcltk': The following object(s) are masked from package:Tcltk : $.tclvar $<-.tclvar addTclPath as.character.tclObj as.character.tclVar as.double.tclObj as.integer.tclObj as.tclObj is.tclObj is.tkwin print.tclObj tclObj tclObj.tclVar tclObj<- tclObj<-.tclVar tclRequire tclvalue tclvalue.default tclvalue.tclObj tclvalue.tclVar tclvalue<- tclvalue<-.default tclvalue<-.tclVar tclvar tclVar tkactivate tkadd tkaddtag tkbbox tkbell tkbind tkbindtags tkbutton tkcanvas tkcanvasx tkcanvasy tkcget tkcheckbutton tkchooseDirectory tkclipboard.append tkclipboard.clear tkclose tkcmd tkcompare tkconfigure tkcoords tkcreate tkcurselection tkdchars tkdebug tkdelete tkdelta tkdeselect tkdestroy tkdialog tkdlineinfo tkdtag tkdump tkentry tkentrycget tkentryconfigure tkevent.add tkevent.delete tkevent.generate tkevent.info tkfile.dir tkfile.tail tkfind tkflash tkfocus tkfont.actual tkfont.configure tkfont.create tkfont.delete tkfont.families tkfont.measure tkfont.metrics tkfont.names tkfraction tkframe tkget tkgetOpenFile tkgetSaveFile tkgettags tkgrab tkgrab.current tkgrab.release tkgrab.set tkgrab.status tkgrid tkgrid.bbox tkgrid.columnconfigure tkgrid.configure tkgrid.forget tkgrid.info tkgrid.location tkgrid.propagate tkgrid.remove tkgrid.rowconfigure tkgrid.size tkgrid.slaves tkicursor tkidentify tkimage.cget tkimage.configure tkimage.create tkimage.names tkindex tkinsert tkinvoke tkitembind tkitemcget tkitemconfigure tkitemfocus tkitemlower tkitemraise tkitemscale tklabel tklistbox tklower tkmark.gravity tkmark.names tkmark.next tkmark.previous tkmark.set tkmark.unset tkmenu tkmenubutton tkmessage tkmessageBox tkmove tknearest tkopen tkpack tkpack.configure tkpack.forget tkpack.info tkpack.propagate tkpack.slaves tkpager tkplace tkplace.configure tkplace.forget tkplace.info tkplace.slaves tkpopup tkpost tkpostcascade tkpostscript tkputs tkradiobutton tkraise tkread tkscale tkscan.dragto tkscan.mark tkscrollbar tksearch tksee tkselect tkselection.adjust tkselection.anchor tkselection.clear tkselection.from tkselection.includes tkselection.present tkselection.range tkselection.set tkselection.to tkset tksize tktag.add tktag.bind tktag.cget tktag.configure tktag.delete tktag.lower tktag.names tktag.nextrange tktag.prevrange tktag.raise tktag.ranges tktag.remove tktext tktitle tktitle<- tktoggle tktoplevel tktype tkunpost tkwait.variable tkwait.visibility tkwait.window tkwidget tkwindow.cget tkwindow.configure tkwindow.create tkwindow.names tkwinfo tkwm.aspect tkwm.client tkwm.colormapwindows tkwm.command tkwm.deiconify tkwm.focusmodel tkwm.frame tkwm.geometry tkwm.grid tkwm.group tkwm.iconbitmap tkwm.iconify tkwm.iconmask tkwm.iconname tkwm.iconposition tkwm.iconwindow tkwm.maxsize tkwm.minsize tkwm.overrideredirect tkwm.positionfrom tkwm.protocol tkwm.resizable tkwm.sizefrom tkwm.state tkwm.title tkwm.transient tkwm.withdraw tkXselection.clear tkXselection.get tkXselection.handle tkXselection.own tkxview tkxview.moveto tkxview.scroll tkyposition tkyview tkyview.moveto tkyview.scroll Error in firstlib(which.lib.loc, package) : couldn't find function "addVig2Menu" Error in eval(expr, envir, enclos) : Package widgetTools unavailable What is the problem? Po

> In R, I loaded affy library, and then I typed in what platform (version of R and OS type)? > > > Data <- ReadAffy(widget=TRUE) > > I got the following: > > Loading required package: tkWidgets > Loading required package: widgetTools > > Attaching package `tcltk': > > > The following object(s) are masked from package:Tcltk : > > $.tclvar $<-.tclvar addTclPath as.character.tclObj > as.character.tclVar as.double.tclObj as.integer.tclObj as.tclObj is.tclObj this sort of thing can happen if the functions in the package got saved into your global environment, or got attached by some method other than a call to library. you may have done this accidentally. start R in a fresh directory (if on unix) and/or remove the offending objects listed in the masking message from your workspace and try again.

I am using Windows NT, R 1.6.2. I tried again, got the following errors: Loading required package: tkWidgets Loading required package: widgetTools Error in firstlib(which.lib.loc, package) : couldn't find function "addVig2Menu" Error in eval(expr, envir, enclos) : Package widgetTools unavailable What should I do? Thanks. Po -----Original Message----- From: Vincent Carey 525-2265 [mailto:stvjc@channing.harvard.edu] Sent: Friday, March 07, 2003 12:35 PM To: Zhao, Po Cc: bioconductor@stat.math.ethz.ch Subject: Re: [BioC] widgetTools > In R, I loaded affy library, and then I typed in what platform (version of R and OS type)? > > > Data <- ReadAffy(widget=TRUE) > > I got the following: > > Loading required package: tkWidgets > Loading required package: widgetTools > > Attaching package `tcltk': > > > The following object(s) are masked from package:Tcltk : > > $.tclvar $<-.tclvar addTclPath as.character.tclObj > as.character.tclVar as.double.tclObj as.integer.tclObj as.tclObj is.tclObj this sort of thing can happen if the functions in the package got saved into your global environment, or got attached by some method other than a call to library. you may have done this accidentally. start R in a fresh directory (if on unix) and/or remove the offending objects listed in the masking message from your workspace and try again.

The output is: [1] "1.2.1" Thanks. -----Original Message----- From: Jeff Gentry [mailto:jgentry@jimmy.harvard.edu] Sent: Friday, March 07, 2003 12:59 PM To: Zhao, Po Cc: 'Vincent Carey 525-2265'; bioconductor@stat.math.ethz.ch Subject: RE: [BioC] widgetTools > Loading required package: tkWidgets > Loading required package: widgetTools > Error in firstlib(which.lib.loc, package) : > couldn't find function "addVig2Menu" > Error in eval(expr, envir, enclos) : Package widgetTools unavailable > > What should I do? Thanks. Can you run 'package.description("tkWidgets",fields="Version")' and report back?

Hi, I'm using the latest install script and R1.6.2, but I can't get widgetTools to install. I there a specific command, or somewhere I can get the zipped package and install manually. I ran getBioC(). Thanks, Kristina