While ChIPQC can ChIPQC GRCh38 usage yields "Unsupported annotation:hg38" on GRCh38/hg38, via annotation="hg38", it requires manual loading of TxDb.Hsapiens.UCSC.hg38.knownGene. This package should be loaded as a dependency, as with other annotations.

hi Coby,

Thank you for the report. This should work now with new ChIPQC version 1.12.1

best,

tom