News:ensembl 89 gtfs and fasta twobits have been added to AnnotationHub
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shepherl 4.1k
@lshep
Last seen 4 hours ago
United States

Hello all, 

The ensembl 89 gtf (converted to GRanges on the fly) and fasta (twobit files) been added to AnnotationHub and are currently available in Bioc3.6 (development) with AnnotationHub (<= 2.9.0):

 

``` 

> library(AnnotationHub)
> hub = AnnotationHub()
updating metadata: retrieving 1 resource
  |======================================================================| 100%
snapshotDate(): 2017-06-07
> length(query(hub, c("ensembl", "gtf", "release-89")))     
[1] 215

> length(query(hub, c("fasta", "release-89", "twobit")))    
[1] 353

```

Thank you

bioconductor annotationhub ensembl89 News • 982 views
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