Total number of duplicates in ChIPQC differs from multiqc ? I check all chromosomes not just one...
In fact 0 duplicates are found with ChIPQC ? How ChiPQC retrieve duplicate ? How can it be explain ?
Also RelCC is Inf for one of my sample , what does it mean ?
I send you a message on your email with questions regarding the results I get with ChIPQC on my data.
Thanks for you help.
Okay great, could you accept the answer here for now? I'll reply to your other message there
tom
Hi Tom,
Could you post the potential reason for why dup% is 0? My input files are BAM files. Both QC report from before and after I performed the deduplication using fastx_collapser from FASTX-Toolkit showed the same results.
Thanks!