hi  everyone

i am new in chip-seq analysis

i did a chip-seq analysis by command line(UBUNTU)

and i want to do a Meta -analysis to integrative all study that dirived from my analysis

but i do not know which package do it ????

please help me

thanks

Your question is too vague. How did you do the "analysis"? Peak-calling? What kind of "meta-analysis" do you want to do? If you're trying to look for differences between samples, googling "differences chip-seq bioconductor" will already give a number of relevant hits.

If you want to use your MACS2 peaks, the DiffBind package offers a straightforward path to identifying differentially bound peaks. The csaw package is another alternative, particularly if your dataset requires more sophisticated normalization.  In either case the original BAM files are required. 

Cheers-

Rory

i mean that i did chip-seq analysis data with command line on ubuntu

i used the MACS2 peak caller for obtain the peakset files .

now i want to finde a package that integrate my peakset data (obtained from macs2 ) in multiple study .

which tools or package that i used is good ???

i hope that it is simly

cheers