Question

Sharing SC3_interactive results

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cfustero ▴ 20

@cfustero-13016

Last seen 7.4 years ago

Madrid (Spain)

Hi,

I have been testing the SC3 package with some single cell data and I was wondering if there is an easy way to share the interactive results.
I read there was an option in an old version of the package to save the results as .rds sc3(interactivity = FALSE) but it's no longer available.

Any help would be appreciated!

Coral

SC3 single-cell shiny • 1.5k views

ADD COMMENT • link updated 7.6 years ago by Vladimir Kiselev ▴ 150 • written 7.6 years ago by cfustero ▴ 20

score 2 · Accepted Answer · 2017-05-12

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Vladimir Kiselev ▴ 150

@vladimir-kiselev-9342

Last seen 5.7 years ago

Sanger Institute, Cambridge, UK

Hi Coral,

In the newest version of SC3, if you share (for example save it in an ".rds" file) a scater object that you used to run the SC3 analysis on, it will contain all the data required for sc3_interactive(). So the person that you share it will only need to run sc3_interactive(YOUR_SCATER_OBJECT) and will see all the results you have produced.

Hope this helps,

Cheers,

Vlad

ADD COMMENT • link 7.6 years ago Vladimir Kiselev ▴ 150

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So if I want to share the results with somebody, she/he will have to install sc3, read the .rds file and run sc3_interactive, right? Is there any way I can just share them as a link?

Thanks again!

ADD REPLY • link 7.6 years ago cfustero ▴ 20

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Yes, it is right. And no, you can't share the results via a link, your collaborator needs to have R and SC3 installed to be able to run sc3_interactive().

Cheers,

Vlad

ADD REPLY • link 7.6 years ago Vladimir Kiselev ▴ 150