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Max
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@max-12908
Last seen 7.7 years ago
I tried to use BioSeqClass function predictPFAM()
# Protein Pfam domain prediction
predictPFAM(seq, hmmpfam.path, pfam.path, Evalue=10^-5)
I downloaded hmmer and Pfam-A.hmm and included their paths in function. But every time i try to use protein sequence in any format I get
" 'x' must be an XStringSet object " error.
I use my sequence in AAStringset clas which is regular class under XStringSet family.
Any suggestions?
Thanks very much!