Found consistent padj values for all the samples in DESeq2 R Package
1
0
Entering edit mode
@jignashapatel10-12884
Last seen 7.6 years ago

Dear Madam/ Sir,

I have got consistently same padj values (0.998801) for all the samples. I have read in the blog that its due to benjamini and hochberg's consequences. Kindly guide me how can i further filtered significant differentially expressed genes without any significant padj values, i.e. < 0.05.

Thank you in advance.

Jignasha


 

deseq2 padj Benjamini and hochberg consequences affy • 1.6k views
ADD COMMENT
0
Entering edit mode
@wolfgang-huber-3550
Last seen 10 weeks ago
EMBL European Molecular Biology Laborat…

It appears that your dataset does not yield any evidence for differential expression. So you could use the same data, but make a different comparison, or use a new dataset and make the same comparison.

ADD COMMENT

Login before adding your answer.

Traffic: 688 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6